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Cluster: HRGMv2_3314_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3314_1 HRGMv2_3314_1_10 10629 11741 + 3.A.1.11.1
TC HRGMv2_3314_1 HRGMv2_3314_1_11 11734 12597 + 3.A.1.11.1
TC HRGMv2_3314_1 HRGMv2_3314_1_12 12591 13361 + 3.A.1.11.1
pfam HRGMv2_3314_1 HRGMv2_3314_1_13 13639 14346 + PhoU_div
TC HRGMv2_3314_1 HRGMv2_3314_1_14 14553 16043 + 2.A.20.3.1
TC HRGMv2_3314_1 HRGMv2_3314_1_15 16025 17548 + 2.A.20.3.1
NULL(UNKNOWN) HRGMv2_3314_1 HRGMv2_3314_1_16 17598 18041 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3314_1 HRGMv2_3314_1_17 18054 18503 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3314_1 HRGMv2_3314_1_18 18932 19876 - CE11
Gene ID: HRGMv2_3314_1_10
Type: TC
Location: 10629 - 11741 (+)
Gene ID: HRGMv2_3314_1_11
Type: TC
Location: 11734 - 12597 (+)
Gene ID: HRGMv2_3314_1_12
Type: TC
Location: 12591 - 13361 (+)
Gene ID: HRGMv2_3314_1_13
Type: pfam
Location: 13639 - 14346 (+)
Gene ID: HRGMv2_3314_1_14
Type: TC
Location: 14553 - 16043 (+)
Gene ID: HRGMv2_3314_1_15
Type: TC
Location: 16025 - 17548 (+)
Gene ID: HRGMv2_3314_1_16
Type:
Location: 17598 - 18041 (-)
Gene ID: HRGMv2_3314_1_17
Type:
Location: 18054 - 18503 (-)
Gene ID: HRGMv2_3314_1_18
Type: CAZyme
Location: 18932 - 19876 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Pseudomonadota
→
Class
Alphaproteobacteria
→
Order
RF32
→
Family
CAG-977
→
Genus
UBA11549
→
Species
UBA11549 sp900550445

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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