Cluster: HRGMv2_3313_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3313
- CGC Family ID: CGCFAM_02201
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3313_34 | HRGMv2_3313_34_1 | 240 | 1169 | - | GT2 |
| pfam | HRGMv2_3313_34 | HRGMv2_3313_34_2 | 1200 | 2312 | - | DUF2155 |
| pfam | HRGMv2_3313_34 | HRGMv2_3313_34_3 | 2296 | 2754 | - | MlaD |
| TC | HRGMv2_3313_34 | HRGMv2_3313_34_4 | 2751 | 3251 | - | 3.A.1.27.3 |
| TC | HRGMv2_3313_34 | HRGMv2_3313_34_5 | 3436 | 4191 | + | 3.A.1.132.1 |
Gene ID: HRGMv2_3313_34_1
Type: CAZyme
Location: 240 - 1169 (-)
Type: CAZyme
Location: 240 - 1169 (-)
Gene ID: HRGMv2_3313_34_2
Type: pfam
Location: 1200 - 2312 (-)
Type: pfam
Location: 1200 - 2312 (-)
Gene ID: HRGMv2_3313_34_3
Type: pfam
Location: 2296 - 2754 (-)
Type: pfam
Location: 2296 - 2754 (-)
Gene ID: HRGMv2_3313_34_4
Type: TC
Location: 2751 - 3251 (-)
Type: TC
Location: 2751 - 3251 (-)
Gene ID: HRGMv2_3313_34_5
Type: TC
Location: 3436 - 4191 (+)
Type: TC
Location: 3436 - 4191 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
51-20
Species
51-20 sp902489795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.