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Cluster: HRGMv2_3301_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3301_28 HRGMv2_3301_28_3 2859 4082 + GH23
CAZyme HRGMv2_3301_28 HRGMv2_3301_28_4 4219 7257 - GH23
pfam HRGMv2_3301_28 HRGMv2_3301_28_5 7428 7922 - Lumazine_bd_2
TC HRGMv2_3301_28 HRGMv2_3301_28_6 8210 9520 - 9.A.40.2.4
TC HRGMv2_3301_28 HRGMv2_3301_28_7 9996 10325 + 3.A.5.1.1
TC HRGMv2_3301_28 HRGMv2_3301_28_8 10635 12512 + 2.A.6.4.1
TC HRGMv2_3301_28 HRGMv2_3301_28_9 12522 13784 + 2.A.6.4.1
TC HRGMv2_3301_28 HRGMv2_3301_28_10 13968 15362 + 2.A.66.1.36
Gene ID: HRGMv2_3301_28_3
Type: CAZyme
Location: 2859 - 4082 (+)
Gene ID: HRGMv2_3301_28_4
Type: CAZyme
Location: 4219 - 7257 (-)
Gene ID: HRGMv2_3301_28_5
Type: pfam
Location: 7428 - 7922 (-)
Gene ID: HRGMv2_3301_28_6
Type: TC
Location: 8210 - 9520 (-)
Gene ID: HRGMv2_3301_28_7
Type: TC
Location: 9996 - 10325 (+)
Gene ID: HRGMv2_3301_28_8
Type: TC
Location: 10635 - 12512 (+)
Gene ID: HRGMv2_3301_28_9
Type: TC
Location: 12522 - 13784 (+)
Gene ID: HRGMv2_3301_28_10
Type: TC
Location: 13968 - 15362 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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