Cluster: HRGMv2_3300_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3300
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3300_25 | HRGMv2_3300_25_17 | 15424 | 17622 | - | 1.B.14.1.1 |
| CAZyme | HRGMv2_3300_25 | HRGMv2_3300_25_18 | 17838 | 19058 | + | GT19 |
| TF | HRGMv2_3300_25 | HRGMv2_3300_25_19 | 19018 | 19941 | - | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_3300_25 | HRGMv2_3300_25_20 | 20130 | 21350 | + | FA_desaturase |
| TC | HRGMv2_3300_25 | HRGMv2_3300_25_21 | 21404 | 22702 | - | 2.A.23.1.3 |
Gene ID: HRGMv2_3300_25_17
Type: TC
Location: 15424 - 17622 (-)
Type: TC
Location: 15424 - 17622 (-)
Gene ID: HRGMv2_3300_25_18
Type: CAZyme
Location: 17838 - 19058 (+)
Type: CAZyme
Location: 17838 - 19058 (+)
Gene ID: HRGMv2_3300_25_19
Type: TF
Location: 19018 - 19941 (-)
Type: TF
Location: 19018 - 19941 (-)
Gene ID: HRGMv2_3300_25_20
Type: pfam
Location: 20130 - 21350 (+)
Type: pfam
Location: 20130 - 21350 (+)
Gene ID: HRGMv2_3300_25_21
Type: TC
Location: 21404 - 22702 (-)
Type: TC
Location: 21404 - 22702 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Moraxellaceae
Genus
Acinetobacter
Species
Acinetobacter albensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.