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Cluster: HRGMv2_3300_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3300_69 HRGMv2_3300_69_2 507 1619 + GH23
pfam HRGMv2_3300_69 HRGMv2_3300_69_3 1684 2067 - SCP2
pfam HRGMv2_3300_69 HRGMv2_3300_69_4 2282 3235 - ATP_bind_3
CAZyme HRGMv2_3300_69 HRGMv2_3300_69_5 3701 4567 + GH23
TC HRGMv2_3300_69 HRGMv2_3300_69_6 5037 5942 + 9.B.1.1.6
NULL(UNKNOWN) HRGMv2_3300_69 HRGMv2_3300_69_7 5996 6346 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3300_69 HRGMv2_3300_69_8 6382 6966 - DUF4112
TC HRGMv2_3300_69 HRGMv2_3300_69_9 7048 8409 - 1.A.26.1.2
TC HRGMv2_3300_69 HRGMv2_3300_69_10 8537 11632 - 2.A.6.2.4
Gene ID: HRGMv2_3300_69_2
Type: CAZyme
Location: 507 - 1619 (+)
Gene ID: HRGMv2_3300_69_3
Type: pfam
Location: 1684 - 2067 (-)
Gene ID: HRGMv2_3300_69_4
Type: pfam
Location: 2282 - 3235 (-)
Gene ID: HRGMv2_3300_69_5
Type: CAZyme
Location: 3701 - 4567 (+)
Gene ID: HRGMv2_3300_69_6
Type: TC
Location: 5037 - 5942 (+)
Gene ID: HRGMv2_3300_69_7
Type:
Location: 5996 - 6346 (-)
Gene ID: HRGMv2_3300_69_8
Type: pfam
Location: 6382 - 6966 (-)
Gene ID: HRGMv2_3300_69_9
Type: TC
Location: 7048 - 8409 (-)
Gene ID: HRGMv2_3300_69_10
Type: TC
Location: 8537 - 11632 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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