Cluster: HRGMv2_3295_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3295
- CGC Family ID: CGCFAM_01775
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3295_16 | HRGMv2_3295_16_51 | 46509 | 47663 | - | CBM50 |
| pfam | HRGMv2_3295_16 | HRGMv2_3295_16_52 | 47784 | 48317 | + | Pep_deformylase |
| pfam | HRGMv2_3295_16 | HRGMv2_3295_16_53 | 48408 | 48827 | + | DUF2946 |
| TC | HRGMv2_3295_16 | HRGMv2_3295_16_54 | 48900 | 50945 | + | 1.B.14.4.1 |
Gene ID: HRGMv2_3295_16_51
Type: CAZyme
Location: 46509 - 47663 (-)
Type: CAZyme
Location: 46509 - 47663 (-)
Gene ID: HRGMv2_3295_16_52
Type: pfam
Location: 47784 - 48317 (+)
Type: pfam
Location: 47784 - 48317 (+)
Gene ID: HRGMv2_3295_16_53
Type: pfam
Location: 48408 - 48827 (+)
Type: pfam
Location: 48408 - 48827 (+)
Gene ID: HRGMv2_3295_16_54
Type: TC
Location: 48900 - 50945 (+)
Type: TC
Location: 48900 - 50945 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Moraxellaceae
Genus
Acinetobacter
Species
Acinetobacter johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.