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Cluster: HRGMv2_3289_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3289_1 HRGMv2_3289_1_215 211196 214411 + GH23
TC HRGMv2_3289_1 HRGMv2_3289_1_216 214427 216262 + 3.A.1.5.21
TC HRGMv2_3289_1 HRGMv2_3289_1_217 216292 217344 + 3.A.1.5.24
TC HRGMv2_3289_1 HRGMv2_3289_1_218 217344 218354 + 3.A.1.5.21
TC HRGMv2_3289_1 HRGMv2_3289_1_219 218332 219921 + 3.A.1.5.24
pfam HRGMv2_3289_1 HRGMv2_3289_1_220 220107 221351 + Oxidored_FMN
TC HRGMv2_3289_1 HRGMv2_3289_1_221 221410 223524 - 1.B.14.1.24
pfam HRGMv2_3289_1 HRGMv2_3289_1_222 223803 224465 - RNase_T | Rv2179c-like
peptidase HRGMv2_3289_1 HRGMv2_3289_1_223 224450 225484 - M38.A02
TC HRGMv2_3289_1 HRGMv2_3289_1_224 225634 226896 + 9.B.34.1.3
Gene ID: HRGMv2_3289_1_215
Type: CAZyme
Location: 211196 - 214411 (+)
Gene ID: HRGMv2_3289_1_216
Type: TC
Location: 214427 - 216262 (+)
Gene ID: HRGMv2_3289_1_217
Type: TC
Location: 216292 - 217344 (+)
Gene ID: HRGMv2_3289_1_218
Type: TC
Location: 217344 - 218354 (+)
Gene ID: HRGMv2_3289_1_219
Type: TC
Location: 218332 - 219921 (+)
Gene ID: HRGMv2_3289_1_220
Type: pfam
Location: 220107 - 221351 (+)
Gene ID: HRGMv2_3289_1_221
Type: TC
Location: 221410 - 223524 (-)
Gene ID: HRGMv2_3289_1_222
Type: pfam
Location: 223803 - 224465 (-)
Gene ID: HRGMv2_3289_1_223
Type: peptidase
Location: 224450 - 225484 (-)
Gene ID: HRGMv2_3289_1_224
Type: TC
Location: 225634 - 226896 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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