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Cluster: HRGMv2_3286_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3286_2 HRGMv2_3286_2_2 2559 3623 + 3.A.1.14.21
STP HRGMv2_3286_2 HRGMv2_3286_2_3 3637 4632 + Peripla_BP_2
TC HRGMv2_3286_2 HRGMv2_3286_2_4 4632 5390 + 3.A.1.14.22
pfam HRGMv2_3286_2 HRGMv2_3286_2_5 5405 6373 + Ldh_1_N | Ldh_1_C
pfam HRGMv2_3286_2 HRGMv2_3286_2_6 6406 8889 - LPG_synthase_C
CAZyme HRGMv2_3286_2 HRGMv2_3286_2_7 8868 9797 - CE1
NULL(UNKNOWN) HRGMv2_3286_2 HRGMv2_3286_2_8 10488 10955 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3286_2 HRGMv2_3286_2_9 11116 13500 - 8.A.7.1.2
Gene ID: HRGMv2_3286_2_2
Type: TC
Location: 2559 - 3623 (+)
Gene ID: HRGMv2_3286_2_3
Type: STP
Location: 3637 - 4632 (+)
Gene ID: HRGMv2_3286_2_4
Type: TC
Location: 4632 - 5390 (+)
Gene ID: HRGMv2_3286_2_5
Type: pfam
Location: 5405 - 6373 (+)
Gene ID: HRGMv2_3286_2_6
Type: pfam
Location: 6406 - 8889 (-)
Gene ID: HRGMv2_3286_2_7
Type: CAZyme
Location: 8868 - 9797 (-)
Gene ID: HRGMv2_3286_2_8
Type:
Location: 10488 - 10955 (+)
Gene ID: HRGMv2_3286_2_9
Type: TC
Location: 11116 - 13500 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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