Cluster: HRGMv2_3286_CGC18
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3286
- CGC Family ID: CGCFAM_07291
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3286_4 | HRGMv2_3286_4_13 | 12786 | 13655 | + | 3.A.1.103.1 |
| TC | HRGMv2_3286_4 | HRGMv2_3286_4_14 | 13655 | 14407 | + | 3.A.1.103.5 |
| CAZyme | HRGMv2_3286_4 | HRGMv2_3286_4_15 | 14529 | 15620 | + | GT2 |
| CAZyme | HRGMv2_3286_4 | HRGMv2_3286_4_16 | 15611 | 16816 | + | GT2 |
| pfam | HRGMv2_3286_4 | HRGMv2_3286_4_17 | 16876 | 18165 | - | UDPG_MGDP_dh | NAD_Gly3P_dh_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| pfam | HRGMv2_3286_4 | HRGMv2_3286_4_18 | 18284 | 19372 | + | Epimerase_2 |
| CAZyme | HRGMv2_3286_4 | HRGMv2_3286_4_19 | 19397 | 20542 | + | GT4 |
| CAZyme | HRGMv2_3286_4 | HRGMv2_3286_4_20 | 20605 | 21813 | - | GT4 |
| CAZyme | HRGMv2_3286_4 | HRGMv2_3286_4_21 | 21995 | 23080 | + | GT4 |
| TC | HRGMv2_3286_4 | HRGMv2_3286_4_22 | 23091 | 24683 | + | 2.A.66.12.2 |
| pfam | HRGMv2_3286_4 | HRGMv2_3286_4_23 | 24695 | 25783 | - | Glycos_transf_1 | Glyco_trans_1_2 | Glyco_trans_1_4 |
| CAZyme | HRGMv2_3286_4 | HRGMv2_3286_4_24 | 25837 | 26988 | + | GT4 |
Gene ID: HRGMv2_3286_4_13
Type: TC
Location: 12786 - 13655 (+)
Type: TC
Location: 12786 - 13655 (+)
Gene ID: HRGMv2_3286_4_14
Type: TC
Location: 13655 - 14407 (+)
Type: TC
Location: 13655 - 14407 (+)
Gene ID: HRGMv2_3286_4_15
Type: CAZyme
Location: 14529 - 15620 (+)
Type: CAZyme
Location: 14529 - 15620 (+)
Gene ID: HRGMv2_3286_4_16
Type: CAZyme
Location: 15611 - 16816 (+)
Type: CAZyme
Location: 15611 - 16816 (+)
Gene ID: HRGMv2_3286_4_17
Type: pfam
Location: 16876 - 18165 (-)
Type: pfam
Location: 16876 - 18165 (-)
Gene ID: HRGMv2_3286_4_18
Type: pfam
Location: 18284 - 19372 (+)
Type: pfam
Location: 18284 - 19372 (+)
Gene ID: HRGMv2_3286_4_19
Type: CAZyme
Location: 19397 - 20542 (+)
Type: CAZyme
Location: 19397 - 20542 (+)
Gene ID: HRGMv2_3286_4_20
Type: CAZyme
Location: 20605 - 21813 (-)
Type: CAZyme
Location: 20605 - 21813 (-)
Gene ID: HRGMv2_3286_4_21
Type: CAZyme
Location: 21995 - 23080 (+)
Type: CAZyme
Location: 21995 - 23080 (+)
Gene ID: HRGMv2_3286_4_22
Type: TC
Location: 23091 - 24683 (+)
Type: TC
Location: 23091 - 24683 (+)
Gene ID: HRGMv2_3286_4_23
Type: pfam
Location: 24695 - 25783 (-)
Type: pfam
Location: 24695 - 25783 (-)
Gene ID: HRGMv2_3286_4_24
Type: CAZyme
Location: 25837 - 26988 (+)
Type: CAZyme
Location: 25837 - 26988 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Propionibacteriales
Family
Propionibacteriaceae
Genus
Propionimicrobium
Species
Propionimicrobium lymphophilum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.