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Cluster: HRGMv2_3285_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3285_1 HRGMv2_3285_1_17 16197 17348 + CE4
pfam HRGMv2_3285_1 HRGMv2_3285_1_18 17437 18186 - His_Phos_1 | His_Phos_1
TC HRGMv2_3285_1 HRGMv2_3285_1_19 18676 18939 + 8.A.8.1.3
TC HRGMv2_3285_1 HRGMv2_3285_1_20 18945 20618 + 8.A.7.1.2
pfam HRGMv2_3285_1 HRGMv2_3285_1_21 20930 21295 - Biotin_lipoyl | Biotin_lipoyl_2
NULL(UNKNOWN) HRGMv2_3285_1 HRGMv2_3285_1_22 21311 21556 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3285_1 HRGMv2_3285_1_23 21572 23146 - 3.B.1.1.2
TC HRGMv2_3285_1 HRGMv2_3285_1_24 23161 24654 - 3.B.1.1.6
Gene ID: HRGMv2_3285_1_17
Type: CAZyme
Location: 16197 - 17348 (+)
Gene ID: HRGMv2_3285_1_18
Type: pfam
Location: 17437 - 18186 (-)
Gene ID: HRGMv2_3285_1_19
Type: TC
Location: 18676 - 18939 (+)
Gene ID: HRGMv2_3285_1_20
Type: TC
Location: 18945 - 20618 (+)
Gene ID: HRGMv2_3285_1_21
Type: pfam
Location: 20930 - 21295 (-)
Gene ID: HRGMv2_3285_1_22
Type:
Location: 21311 - 21556 (-)
Gene ID: HRGMv2_3285_1_23
Type: TC
Location: 21572 - 23146 (-)
Gene ID: HRGMv2_3285_1_24
Type: TC
Location: 23161 - 24654 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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