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Cluster: HRGMv2_3285_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3285_1 HRGMv2_3285_1_7 6906 8519 - GH13_30
pfam HRGMv2_3285_1 HRGMv2_3285_1_8 8560 9111 - YgbB
pfam HRGMv2_3285_1 HRGMv2_3285_1_9 9205 10005 - IspD | NTP_transf_3
TC HRGMv2_3285_1 HRGMv2_3285_1_10 10312 10605 + 4.A.5.1.7
pfam HRGMv2_3285_1 HRGMv2_3285_1_11 10615 11070 + PTS_EIIA_2
pfam HRGMv2_3285_1 HRGMv2_3285_1_12 11273 11758 - CarD_TRCF_RID | CarD_C
CAZyme HRGMv2_3285_1 HRGMv2_3285_1_13 12091 13278 + GT87
Gene ID: HRGMv2_3285_1_7
Type: CAZyme
Location: 6906 - 8519 (-)
Gene ID: HRGMv2_3285_1_8
Type: pfam
Location: 8560 - 9111 (-)
Gene ID: HRGMv2_3285_1_9
Type: pfam
Location: 9205 - 10005 (-)
Gene ID: HRGMv2_3285_1_10
Type: TC
Location: 10312 - 10605 (+)
Gene ID: HRGMv2_3285_1_11
Type: pfam
Location: 10615 - 11070 (+)
Gene ID: HRGMv2_3285_1_12
Type: pfam
Location: 11273 - 11758 (-)
Gene ID: HRGMv2_3285_1_13
Type: CAZyme
Location: 12091 - 13278 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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