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Cluster: HRGMv2_3279_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3279_22 HRGMv2_3279_22_16 16900 18408 - 2.A.35.2.1
TC HRGMv2_3279_22 HRGMv2_3279_22_17 19056 19790 + 3.A.1.114.1
pfam HRGMv2_3279_22 HRGMv2_3279_22_18 19806 20732 + SUFBD_core
pfam HRGMv2_3279_22 HRGMv2_3279_22_19 20784 21539 + Exo_endo_phos
TC HRGMv2_3279_22 HRGMv2_3279_22_20 21664 22698 - 2.A.98.1.4
pfam HRGMv2_3279_22 HRGMv2_3279_22_21 22861 23154 + Trns_repr_metal
TC HRGMv2_3279_22 HRGMv2_3279_22_22 23166 25769 + 3.A.3.5.15
CAZyme HRGMv2_3279_22 HRGMv2_3279_22_23 25830 26636 + CE4
Gene ID: HRGMv2_3279_22_16
Type: TC
Location: 16900 - 18408 (-)
Gene ID: HRGMv2_3279_22_17
Type: TC
Location: 19056 - 19790 (+)
Gene ID: HRGMv2_3279_22_18
Type: pfam
Location: 19806 - 20732 (+)
Gene ID: HRGMv2_3279_22_19
Type: pfam
Location: 20784 - 21539 (+)
Gene ID: HRGMv2_3279_22_20
Type: TC
Location: 21664 - 22698 (-)
Gene ID: HRGMv2_3279_22_21
Type: pfam
Location: 22861 - 23154 (+)
Gene ID: HRGMv2_3279_22_22
Type: TC
Location: 23166 - 25769 (+)
Gene ID: HRGMv2_3279_22_23
Type: CAZyme
Location: 25830 - 26636 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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