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Cluster: HRGMv2_3255_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3255_16 HRGMv2_3255_16_21 17649 18494 - 4.A.6.1.4
TC HRGMv2_3255_16 HRGMv2_3255_16_22 18484 19299 - 4.A.6.1.4
TC HRGMv2_3255_16 HRGMv2_3255_16_23 19321 19797 - 4.A.6.1.4
TF HRGMv2_3255_16 HRGMv2_3255_16_24 20127 21293 + HTH_AraC | HTH_AraC
pfam HRGMv2_3255_16 HRGMv2_3255_16_25 21415 21693 - YajC
TC HRGMv2_3255_16 HRGMv2_3255_16_26 21696 22127 - 4.A.6.1.14
STP HRGMv2_3255_16 HRGMv2_3255_16_27 22289 23467 - SIS | SIS
CAZyme HRGMv2_3255_16 HRGMv2_3255_16_28 23663 24802 + CE9
Gene ID: HRGMv2_3255_16_21
Type: TC
Location: 17649 - 18494 (-)
Gene ID: HRGMv2_3255_16_22
Type: TC
Location: 18484 - 19299 (-)
Gene ID: HRGMv2_3255_16_23
Type: TC
Location: 19321 - 19797 (-)
Gene ID: HRGMv2_3255_16_24
Type: TF
Location: 20127 - 21293 (+)
Gene ID: HRGMv2_3255_16_25
Type: pfam
Location: 21415 - 21693 (-)
Gene ID: HRGMv2_3255_16_26
Type: TC
Location: 21696 - 22127 (-)
Gene ID: HRGMv2_3255_16_27
Type: STP
Location: 22289 - 23467 (-)
Gene ID: HRGMv2_3255_16_28
Type: CAZyme
Location: 23663 - 24802 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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