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Cluster: HRGMv2_3255_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3255_122 HRGMv2_3255_122_1 482 2740 + GT35
TC HRGMv2_3255_122 HRGMv2_3255_122_2 2944 4287 + 3.A.1.1.45
TC HRGMv2_3255_122 HRGMv2_3255_122_3 4563 5408 + 3.A.1.1.45
TC HRGMv2_3255_122 HRGMv2_3255_122_4 5408 6262 + 3.A.1.1.45
CAZyme HRGMv2_3255_122 HRGMv2_3255_122_5 6288 7769 + GH77
TF HRGMv2_3255_122 HRGMv2_3255_122_6 7834 8868 + LacI
TC HRGMv2_3255_122 HRGMv2_3255_122_7 8907 10019 + 3.A.1.1.26
TC HRGMv2_3255_122 HRGMv2_3255_122_8 10101 10727 + 9.B.28.1.2
Gene ID: HRGMv2_3255_122_1
Type: CAZyme
Location: 482 - 2740 (+)
Gene ID: HRGMv2_3255_122_2
Type: TC
Location: 2944 - 4287 (+)
Gene ID: HRGMv2_3255_122_3
Type: TC
Location: 4563 - 5408 (+)
Gene ID: HRGMv2_3255_122_4
Type: TC
Location: 5408 - 6262 (+)
Gene ID: HRGMv2_3255_122_5
Type: CAZyme
Location: 6288 - 7769 (+)
Gene ID: HRGMv2_3255_122_6
Type: TF
Location: 7834 - 8868 (+)
Gene ID: HRGMv2_3255_122_7
Type: TC
Location: 8907 - 10019 (+)
Gene ID: HRGMv2_3255_122_8
Type: TC
Location: 10101 - 10727 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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