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Cluster: HRGMv2_3254_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3254_27 HRGMv2_3254_27_4 2957 4765 + 9.B.106.2.2
pfam HRGMv2_3254_27 HRGMv2_3254_27_5 4788 5663 + MMR_HSR1 | RsgA_GTPase | RsgA_N
pfam HRGMv2_3254_27 HRGMv2_3254_27_6 5699 6346 + Ribul_P_3_epim
CAZyme HRGMv2_3254_27 HRGMv2_3254_27_7 6424 9561 - GT51
TC HRGMv2_3254_27 HRGMv2_3254_27_8 9742 11835 + 3.A.11.1.1
pfam HRGMv2_3254_27 HRGMv2_3254_27_9 11840 12892 + DNA_pol3_delta | DNA_pol3_delta_C
TC HRGMv2_3254_27 HRGMv2_3254_27_10 12898 13824 + 2.A.7.3.47
STP HRGMv2_3254_27 HRGMv2_3254_27_11 13805 15655 + Pyr_redox_2
TC HRGMv2_3254_27 HRGMv2_3254_27_12 15649 17388 + 3.D.1.5.1
Gene ID: HRGMv2_3254_27_4
Type: TC
Location: 2957 - 4765 (+)
Gene ID: HRGMv2_3254_27_5
Type: pfam
Location: 4788 - 5663 (+)
Gene ID: HRGMv2_3254_27_6
Type: pfam
Location: 5699 - 6346 (+)
Gene ID: HRGMv2_3254_27_7
Type: CAZyme
Location: 6424 - 9561 (-)
Gene ID: HRGMv2_3254_27_8
Type: TC
Location: 9742 - 11835 (+)
Gene ID: HRGMv2_3254_27_9
Type: pfam
Location: 11840 - 12892 (+)
Gene ID: HRGMv2_3254_27_10
Type: TC
Location: 12898 - 13824 (+)
Gene ID: HRGMv2_3254_27_11
Type: STP
Location: 13805 - 15655 (+)
Gene ID: HRGMv2_3254_27_12
Type: TC
Location: 15649 - 17388 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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