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Cluster: HRGMv2_3254_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3254_10 HRGMv2_3254_10_49 43363 45888 + 3.A.12.1.1
pfam HRGMv2_3254_10 HRGMv2_3254_10_50 45892 47208 + UPF0004 | TRAM | Radical_SAM | TRAM_2
TC HRGMv2_3254_10 HRGMv2_3254_10_51 47211 47741 + 4.F.1.1.7
pfam HRGMv2_3254_10 HRGMv2_3254_10_52 47775 49007 + MoCF_biosynth | CinA | CinA_KH
pfam HRGMv2_3254_10 HRGMv2_3254_10_53 49088 49396 + Trns_repr_metal
TC HRGMv2_3254_10 HRGMv2_3254_10_54 49413 51950 + 3.A.3.5.15
pfam HRGMv2_3254_10 HRGMv2_3254_10_55 52233 53324 + RecA | Rad51 | RecA_C
CAZyme HRGMv2_3254_10 HRGMv2_3254_10_56 53689 54600 + CE4
Gene ID: HRGMv2_3254_10_49
Type: TC
Location: 43363 - 45888 (+)
Gene ID: HRGMv2_3254_10_50
Type: pfam
Location: 45892 - 47208 (+)
Gene ID: HRGMv2_3254_10_51
Type: TC
Location: 47211 - 47741 (+)
Gene ID: HRGMv2_3254_10_52
Type: pfam
Location: 47775 - 49007 (+)
Gene ID: HRGMv2_3254_10_53
Type: pfam
Location: 49088 - 49396 (+)
Gene ID: HRGMv2_3254_10_54
Type: TC
Location: 49413 - 51950 (+)
Gene ID: HRGMv2_3254_10_55
Type: pfam
Location: 52233 - 53324 (+)
Gene ID: HRGMv2_3254_10_56
Type: CAZyme
Location: 53689 - 54600 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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