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Cluster: HRGMv2_3247_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3247_17 HRGMv2_3247_17_1 246 932 - 2.A.79.1.6
TC HRGMv2_3247_17 HRGMv2_3247_17_2 934 1710 - 2.A.79.1.5
pfam HRGMv2_3247_17 HRGMv2_3247_17_3 1980 3449 + CW_binding_2 | CW_binding_2 | CW_binding_2
TF HRGMv2_3247_17 HRGMv2_3247_17_4 3701 4240 + HTH_3
TC HRGMv2_3247_17 HRGMv2_3247_17_5 4263 5306 + 3.A.1.11.8
TC HRGMv2_3247_17 HRGMv2_3247_17_6 5308 6174 + 3.A.1.11.8
TC HRGMv2_3247_17 HRGMv2_3247_17_7 6174 6980 + 3.A.1.11.8
TC HRGMv2_3247_17 HRGMv2_3247_17_8 6998 8083 + 3.A.1.11.7
CAZyme HRGMv2_3247_17 HRGMv2_3247_17_9 8202 9680 - GH77
CAZyme HRGMv2_3247_17 HRGMv2_3247_17_10 9766 11637 - GH13_39
CAZyme HRGMv2_3247_17 HRGMv2_3247_17_11 12091 13956 + GH13_9
pfam HRGMv2_3247_17 HRGMv2_3247_17_12 13978 15150 + NTP_transferase | Hexapep_GlmU
pfam HRGMv2_3247_17 HRGMv2_3247_17_13 15162 16268 + NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_3247_17 HRGMv2_3247_17_14 16364 17788 + GT5
CAZyme HRGMv2_3247_17 HRGMv2_3247_17_15 17959 20346 + GT35
pfam HRGMv2_3247_17 HRGMv2_3247_17_16 20496 21860 + RelA_SpoT
pfam HRGMv2_3247_17 HRGMv2_3247_17_17 21889 22761 + Radical_SAM
TC HRGMv2_3247_17 HRGMv2_3247_17_18 22900 24528 + 2.A.58.2.2
pfam HRGMv2_3247_17 HRGMv2_3247_17_19 24694 25695 + A_deaminase | Amidohydro_1
TC HRGMv2_3247_17 HRGMv2_3247_17_20 25695 26504 + 3.A.1.132.3
Gene ID: HRGMv2_3247_17_1
Type: TC
Location: 246 - 932 (-)
Gene ID: HRGMv2_3247_17_2
Type: TC
Location: 934 - 1710 (-)
Gene ID: HRGMv2_3247_17_3
Type: pfam
Location: 1980 - 3449 (+)
Gene ID: HRGMv2_3247_17_4
Type: TF
Location: 3701 - 4240 (+)
Gene ID: HRGMv2_3247_17_5
Type: TC
Location: 4263 - 5306 (+)
Gene ID: HRGMv2_3247_17_6
Type: TC
Location: 5308 - 6174 (+)
Gene ID: HRGMv2_3247_17_7
Type: TC
Location: 6174 - 6980 (+)
Gene ID: HRGMv2_3247_17_8
Type: TC
Location: 6998 - 8083 (+)
Gene ID: HRGMv2_3247_17_9
Type: CAZyme
Location: 8202 - 9680 (-)
Gene ID: HRGMv2_3247_17_10
Type: CAZyme
Location: 9766 - 11637 (-)
Gene ID: HRGMv2_3247_17_11
Type: CAZyme
Location: 12091 - 13956 (+)
Gene ID: HRGMv2_3247_17_12
Type: pfam
Location: 13978 - 15150 (+)
Gene ID: HRGMv2_3247_17_13
Type: pfam
Location: 15162 - 16268 (+)
Gene ID: HRGMv2_3247_17_14
Type: CAZyme
Location: 16364 - 17788 (+)
Gene ID: HRGMv2_3247_17_15
Type: CAZyme
Location: 17959 - 20346 (+)
Gene ID: HRGMv2_3247_17_16
Type: pfam
Location: 20496 - 21860 (+)
Gene ID: HRGMv2_3247_17_17
Type: pfam
Location: 21889 - 22761 (+)
Gene ID: HRGMv2_3247_17_18
Type: TC
Location: 22900 - 24528 (+)
Gene ID: HRGMv2_3247_17_19
Type: pfam
Location: 24694 - 25695 (+)
Gene ID: HRGMv2_3247_17_20
Type: TC
Location: 25695 - 26504 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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