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Cluster: HRGMv2_3235_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3235_3 HRGMv2_3235_3_35 37850 39679 - 3.A.1.135.6
TC HRGMv2_3235_3 HRGMv2_3235_3_36 39679 41418 - 3.A.1.135.6
TF HRGMv2_3235_3 HRGMv2_3235_3_37 41415 41912 - MarR
pfam HRGMv2_3235_3 HRGMv2_3235_3_38 42197 43063 - DHDPS
TC HRGMv2_3235_3 HRGMv2_3235_3_39 43452 44048 + 3.A.1.25.5
CAZyme HRGMv2_3235_3 HRGMv2_3235_3_40 44234 45385 + GH3
NULL(UNKNOWN) HRGMv2_3235_3 HRGMv2_3235_3_41 45880 46434 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_3235_3 HRGMv2_3235_3_42 46692 47021 + HTH_5
TC HRGMv2_3235_3 HRGMv2_3235_3_43 47165 48460 - 2.A.35.1.5
Gene ID: HRGMv2_3235_3_35
Type: TC
Location: 37850 - 39679 (-)
Gene ID: HRGMv2_3235_3_36
Type: TC
Location: 39679 - 41418 (-)
Gene ID: HRGMv2_3235_3_37
Type: TF
Location: 41415 - 41912 (-)
Gene ID: HRGMv2_3235_3_38
Type: pfam
Location: 42197 - 43063 (-)
Gene ID: HRGMv2_3235_3_39
Type: TC
Location: 43452 - 44048 (+)
Gene ID: HRGMv2_3235_3_40
Type: CAZyme
Location: 44234 - 45385 (+)
Gene ID: HRGMv2_3235_3_41
Type:
Location: 45880 - 46434 (+)
Gene ID: HRGMv2_3235_3_42
Type: TF
Location: 46692 - 47021 (+)
Gene ID: HRGMv2_3235_3_43
Type: TC
Location: 47165 - 48460 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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