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Cluster: HRGMv2_3235_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3235_2 HRGMv2_3235_2_32 28601 29089 + 9.A.11.1.1
TC HRGMv2_3235_2 HRGMv2_3235_2_33 29215 30273 + 9.A.11.1.1
pfam HRGMv2_3235_2 HRGMv2_3235_2_34 30357 30710 + SpoVAC_SpoVAEB
CAZyme HRGMv2_3235_2 HRGMv2_3235_2_35 30855 33794 - GT51
TC HRGMv2_3235_2 HRGMv2_3235_2_36 33961 36330 + 3.A.11.1.1
pfam HRGMv2_3235_2 HRGMv2_3235_2_37 36350 37420 + DNA_pol3_delta | DNA_pol3_delta_C
TC HRGMv2_3235_2 HRGMv2_3235_2_38 37644 38162 + 3.D.1.5.1
TC HRGMv2_3235_2 HRGMv2_3235_2_39 38174 39922 + 3.D.1.5.1
Gene ID: HRGMv2_3235_2_32
Type: TC
Location: 28601 - 29089 (+)
Gene ID: HRGMv2_3235_2_33
Type: TC
Location: 29215 - 30273 (+)
Gene ID: HRGMv2_3235_2_34
Type: pfam
Location: 30357 - 30710 (+)
Gene ID: HRGMv2_3235_2_35
Type: CAZyme
Location: 30855 - 33794 (-)
Gene ID: HRGMv2_3235_2_36
Type: TC
Location: 33961 - 36330 (+)
Gene ID: HRGMv2_3235_2_37
Type: pfam
Location: 36350 - 37420 (+)
Gene ID: HRGMv2_3235_2_38
Type: TC
Location: 37644 - 38162 (+)
Gene ID: HRGMv2_3235_2_39
Type: TC
Location: 38174 - 39922 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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