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Cluster: HRGMv2_3230_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3230_1 HRGMv2_3230_1_229 253486 254616 - GT4
pfam HRGMv2_3230_1 HRGMv2_3230_1_230 255214 256986 - DUF2142
CAZyme HRGMv2_3230_1 HRGMv2_3230_1_231 257040 258197 - GT4
pfam HRGMv2_3230_1 HRGMv2_3230_1_232 258200 258565 - DUF2304
CAZyme HRGMv2_3230_1 HRGMv2_3230_1_233 258582 259271 - GT2
CAZyme HRGMv2_3230_1 HRGMv2_3230_1_234 259318 260262 - GT11
CAZyme HRGMv2_3230_1 HRGMv2_3230_1_235 260284 261354 - GT4
pfam HRGMv2_3230_1 HRGMv2_3230_1_236 261383 262519 - Amino_oxidase | GLF | NAD_binding_8
pfam HRGMv2_3230_1 HRGMv2_3230_1_237 262579 263814 - EpsG
CAZyme HRGMv2_3230_1 HRGMv2_3230_1_238 263888 264646 - GT111
TC HRGMv2_3230_1 HRGMv2_3230_1_239 264654 266732 - 9.B.18.1.2
TC HRGMv2_3230_1 HRGMv2_3230_1_240 266793 268265 - 2.A.66.2.16
pfam HRGMv2_3230_1 HRGMv2_3230_1_241 268290 269861 - Wzy_C
CAZyme HRGMv2_3230_1 HRGMv2_3230_1_242 269861 270709 - GT2
pfam HRGMv2_3230_1 HRGMv2_3230_1_243 270710 271765 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
pfam HRGMv2_3230_1 HRGMv2_3230_1_244 271758 272477 - IspD | NTP_transf_3
CAZyme HRGMv2_3230_1 HRGMv2_3230_1_245 272505 273440 - GT2
pfam HRGMv2_3230_1 HRGMv2_3230_1_246 273476 274312 - LicD
CAZyme HRGMv2_3230_1 HRGMv2_3230_1_247 274309 275091 - GT2
pfam HRGMv2_3230_1 HRGMv2_3230_1_248 275078 276328 - LytR_cpsA_psr
TC HRGMv2_3230_1 HRGMv2_3230_1_249 276348 277031 - 9.B.18.1.3
pfam HRGMv2_3230_1 HRGMv2_3230_1_250 277035 278243 - Aminotran_1_2 | DegT_DnrJ_EryC1
TC HRGMv2_3230_1 HRGMv2_3230_1_251 278265 280139 - 9.B.18.2.1
Gene ID: HRGMv2_3230_1_229
Type: CAZyme
Location: 253486 - 254616 (-)
Gene ID: HRGMv2_3230_1_230
Type: pfam
Location: 255214 - 256986 (-)
Gene ID: HRGMv2_3230_1_231
Type: CAZyme
Location: 257040 - 258197 (-)
Gene ID: HRGMv2_3230_1_232
Type: pfam
Location: 258200 - 258565 (-)
Gene ID: HRGMv2_3230_1_233
Type: CAZyme
Location: 258582 - 259271 (-)
Gene ID: HRGMv2_3230_1_234
Type: CAZyme
Location: 259318 - 260262 (-)
Gene ID: HRGMv2_3230_1_235
Type: CAZyme
Location: 260284 - 261354 (-)
Gene ID: HRGMv2_3230_1_236
Type: pfam
Location: 261383 - 262519 (-)
Gene ID: HRGMv2_3230_1_237
Type: pfam
Location: 262579 - 263814 (-)
Gene ID: HRGMv2_3230_1_238
Type: CAZyme
Location: 263888 - 264646 (-)
Gene ID: HRGMv2_3230_1_239
Type: TC
Location: 264654 - 266732 (-)
Gene ID: HRGMv2_3230_1_240
Type: TC
Location: 266793 - 268265 (-)
Gene ID: HRGMv2_3230_1_241
Type: pfam
Location: 268290 - 269861 (-)
Gene ID: HRGMv2_3230_1_242
Type: CAZyme
Location: 269861 - 270709 (-)
Gene ID: HRGMv2_3230_1_243
Type: pfam
Location: 270710 - 271765 (-)
Gene ID: HRGMv2_3230_1_244
Type: pfam
Location: 271758 - 272477 (-)
Gene ID: HRGMv2_3230_1_245
Type: CAZyme
Location: 272505 - 273440 (-)
Gene ID: HRGMv2_3230_1_246
Type: pfam
Location: 273476 - 274312 (-)
Gene ID: HRGMv2_3230_1_247
Type: CAZyme
Location: 274309 - 275091 (-)
Gene ID: HRGMv2_3230_1_248
Type: pfam
Location: 275078 - 276328 (-)
Gene ID: HRGMv2_3230_1_249
Type: TC
Location: 276348 - 277031 (-)
Gene ID: HRGMv2_3230_1_250
Type: pfam
Location: 277035 - 278243 (-)
Gene ID: HRGMv2_3230_1_251
Type: TC
Location: 278265 - 280139 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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