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Cluster: HRGMv2_3230_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3230_12 HRGMv2_3230_12_37 38750 40012 - 2.A.45.2.2
pfam HRGMv2_3230_12 HRGMv2_3230_12_38 40321 44001 + MucBP
TC HRGMv2_3230_12 HRGMv2_3230_12_39 44299 45171 + 9.B.27.1.2
TC HRGMv2_3230_12 HRGMv2_3230_12_40 45190 45975 + 9.B.27.1.1
pfam HRGMv2_3230_12 HRGMv2_3230_12_41 46010 47008 + CCG | CCG
CAZyme HRGMv2_3230_12 HRGMv2_3230_12_42 47008 49056 + GT2
CAZyme HRGMv2_3230_12 HRGMv2_3230_12_43 49056 51179 + GT4
pfam HRGMv2_3230_12 HRGMv2_3230_12_44 51176 52480 + Wzy_C
TC HRGMv2_3230_12 HRGMv2_3230_12_45 52477 53661 + 2.A.50.2.1
Gene ID: HRGMv2_3230_12_37
Type: TC
Location: 38750 - 40012 (-)
Gene ID: HRGMv2_3230_12_38
Type: pfam
Location: 40321 - 44001 (+)
Gene ID: HRGMv2_3230_12_39
Type: TC
Location: 44299 - 45171 (+)
Gene ID: HRGMv2_3230_12_40
Type: TC
Location: 45190 - 45975 (+)
Gene ID: HRGMv2_3230_12_41
Type: pfam
Location: 46010 - 47008 (+)
Gene ID: HRGMv2_3230_12_42
Type: CAZyme
Location: 47008 - 49056 (+)
Gene ID: HRGMv2_3230_12_43
Type: CAZyme
Location: 49056 - 51179 (+)
Gene ID: HRGMv2_3230_12_44
Type: pfam
Location: 51176 - 52480 (+)
Gene ID: HRGMv2_3230_12_45
Type: TC
Location: 52477 - 53661 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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