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Cluster: HRGMv2_3230_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3230_10 HRGMv2_3230_10_44 52778 53461 + 8.A.3.2.3
pfam HRGMv2_3230_10 HRGMv2_3230_10_45 53466 54479 + LytR_cpsA_psr
TC HRGMv2_3230_10 HRGMv2_3230_10_46 54538 55965 + 9.B.18.1.2
pfam HRGMv2_3230_10 HRGMv2_3230_10_47 56423 57352 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_3230_10 HRGMv2_3230_10_48 57381 58493 + GT4
CAZyme HRGMv2_3230_10 HRGMv2_3230_10_49 58681 59508 + GT2
CAZyme HRGMv2_3230_10 HRGMv2_3230_10_50 59512 60513 + GT2
CAZyme HRGMv2_3230_10 HRGMv2_3230_10_51 60541 61491 + GT2
Gene ID: HRGMv2_3230_10_44
Type: TC
Location: 52778 - 53461 (+)
Gene ID: HRGMv2_3230_10_45
Type: pfam
Location: 53466 - 54479 (+)
Gene ID: HRGMv2_3230_10_46
Type: TC
Location: 54538 - 55965 (+)
Gene ID: HRGMv2_3230_10_47
Type: pfam
Location: 56423 - 57352 (+)
Gene ID: HRGMv2_3230_10_48
Type: CAZyme
Location: 57381 - 58493 (+)
Gene ID: HRGMv2_3230_10_49
Type: CAZyme
Location: 58681 - 59508 (+)
Gene ID: HRGMv2_3230_10_50
Type: CAZyme
Location: 59512 - 60513 (+)
Gene ID: HRGMv2_3230_10_51
Type: CAZyme
Location: 60541 - 61491 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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