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Cluster: HRGMv2_3230_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3230_7 HRGMv2_3230_7_40 43154 45520 + 9.A.8.1.6
peptidase HRGMv2_3230_7 HRGMv2_3230_7_41 45688 47469 - M24.UPB
TF HRGMv2_3230_7 HRGMv2_3230_7_42 47790 48356 + MarR
TC HRGMv2_3230_7 HRGMv2_3230_7_43 48353 50677 + 3.A.1.135.6
TC HRGMv2_3230_7 HRGMv2_3230_7_44 50677 52539 + 3.A.1.135.6
NULL(UNKNOWN) HRGMv2_3230_7 HRGMv2_3230_7_45 52945 53259 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3230_7 HRGMv2_3230_7_46 53442 56003 - GT35
CAZyme HRGMv2_3230_7 HRGMv2_3230_7_47 56052 57803 - GT5
CAZyme HRGMv2_3230_7 HRGMv2_3230_7_48 58070 60109 + GH13_9
Gene ID: HRGMv2_3230_7_40
Type: TC
Location: 43154 - 45520 (+)
Gene ID: HRGMv2_3230_7_41
Type: peptidase
Location: 45688 - 47469 (-)
Gene ID: HRGMv2_3230_7_42
Type: TF
Location: 47790 - 48356 (+)
Gene ID: HRGMv2_3230_7_43
Type: TC
Location: 48353 - 50677 (+)
Gene ID: HRGMv2_3230_7_44
Type: TC
Location: 50677 - 52539 (+)
Gene ID: HRGMv2_3230_7_45
Type:
Location: 52945 - 53259 (+)
Gene ID: HRGMv2_3230_7_46
Type: CAZyme
Location: 53442 - 56003 (-)
Gene ID: HRGMv2_3230_7_47
Type: CAZyme
Location: 56052 - 57803 (-)
Gene ID: HRGMv2_3230_7_48
Type: CAZyme
Location: 58070 - 60109 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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