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Cluster: HRGMv2_3228_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3228_1 HRGMv2_3228_1_887 932169 933518 - GH32
TC HRGMv2_3228_1 HRGMv2_3228_1_888 933518 934639 - 3.A.1.1.20
TC HRGMv2_3228_1 HRGMv2_3228_1_889 934643 935494 - 3.A.1.1.20
TC HRGMv2_3228_1 HRGMv2_3228_1_890 935498 936382 - 3.A.1.1.20
TC HRGMv2_3228_1 HRGMv2_3228_1_891 936388 937695 - 3.A.1.1.20
TF HRGMv2_3228_1 HRGMv2_3228_1_892 937896 938918 + LacI
TC HRGMv2_3228_1 HRGMv2_3228_1_893 939042 940310 - 2.A.23.1.5
Gene ID: HRGMv2_3228_1_887
Type: CAZyme
Location: 932169 - 933518 (-)
Gene ID: HRGMv2_3228_1_888
Type: TC
Location: 933518 - 934639 (-)
Gene ID: HRGMv2_3228_1_889
Type: TC
Location: 934643 - 935494 (-)
Gene ID: HRGMv2_3228_1_890
Type: TC
Location: 935498 - 936382 (-)
Gene ID: HRGMv2_3228_1_891
Type: TC
Location: 936388 - 937695 (-)
Gene ID: HRGMv2_3228_1_892
Type: TF
Location: 937896 - 938918 (+)
Gene ID: HRGMv2_3228_1_893
Type: TC
Location: 939042 - 940310 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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