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Cluster: HRGMv2_3228_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3228_1 HRGMv2_3228_1_242 273431 275164 + 3.A.1.135.5
TC HRGMv2_3228_1 HRGMv2_3228_1_243 275157 277055 + 3.A.1.135.5
NULL(UNKNOWN) HRGMv2_3228_1 HRGMv2_3228_1_244 277341 277688 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3228_1 HRGMv2_3228_1_245 277707 279692 + Transpeptidase | PBP_dimer | PASTA
TC HRGMv2_3228_1 HRGMv2_3228_1_246 280022 280987 + 9.B.146.1.6
pfam HRGMv2_3228_1 HRGMv2_3228_1_247 281007 282362 + Mur_ligase_C | Mur_ligase_M | MurD-like_N
TC HRGMv2_3228_1 HRGMv2_3228_1_248 282416 283552 + 2.A.103.1.3
CAZyme HRGMv2_3228_1 HRGMv2_3228_1_249 283567 284775 + GT28
Gene ID: HRGMv2_3228_1_242
Type: TC
Location: 273431 - 275164 (+)
Gene ID: HRGMv2_3228_1_243
Type: TC
Location: 275157 - 277055 (+)
Gene ID: HRGMv2_3228_1_244
Type:
Location: 277341 - 277688 (+)
Gene ID: HRGMv2_3228_1_245
Type: pfam
Location: 277707 - 279692 (+)
Gene ID: HRGMv2_3228_1_246
Type: TC
Location: 280022 - 280987 (+)
Gene ID: HRGMv2_3228_1_247
Type: pfam
Location: 281007 - 282362 (+)
Gene ID: HRGMv2_3228_1_248
Type: TC
Location: 282416 - 283552 (+)
Gene ID: HRGMv2_3228_1_249
Type: CAZyme
Location: 283567 - 284775 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3228_1_249 vegan > omnivore 3.36122 0.02517
HRGMv2_3228_1_249 vegetarian > omnivore 3.69804 0.01416

🧭 Explore Read Mapping of CGC

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