Cluster: HRGMv2_3228_CGC1
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_3228
- CGC Family ID: CGCFAM_03509
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3228_1 | HRGMv2_3228_1_3 | 2980 | 3699 | + | 8.A.3.1.2 |
| TC | HRGMv2_3228_1 | HRGMv2_3228_1_4 | 3995 | 5878 | + | 9.B.18.2.1 |
| TC | HRGMv2_3228_1 | HRGMv2_3228_1_5 | 5950 | 6588 | + | 9.B.18.1.3 |
| CAZyme | HRGMv2_3228_1 | HRGMv2_3228_1_6 | 6600 | 7685 | + | GT4 |
| TC | HRGMv2_3228_1 | HRGMv2_3228_1_7 | 7689 | 8825 | + | 9.B.183.1.9 |
| CAZyme | HRGMv2_3228_1 | HRGMv2_3228_1_8 | 8845 | 9816 | + | GT2 |
| CAZyme | HRGMv2_3228_1 | HRGMv2_3228_1_9 | 9819 | 10745 | + | GT2 |
| pfam | HRGMv2_3228_1 | HRGMv2_3228_1_10 | 10745 | 11722 | + | DUF6625 |
| CAZyme | HRGMv2_3228_1 | HRGMv2_3228_1_11 | 11738 | 12850 | + | GT4 |
| pfam | HRGMv2_3228_1 | HRGMv2_3228_1_12 | 12855 | 13397 | + | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_3228_1 | HRGMv2_3228_1_13 | 13410 | 14183 | + | GT32 |
| CAZyme | HRGMv2_3228_1 | HRGMv2_3228_1_14 | 14192 | 15190 | + | GT2 |
| CAZyme | HRGMv2_3228_1 | HRGMv2_3228_1_15 | 15200 | 16159 | + | GT2 |
| CAZyme | HRGMv2_3228_1 | HRGMv2_3228_1_16 | 16184 | 17179 | + | GT32 |
| CAZyme | HRGMv2_3228_1 | HRGMv2_3228_1_17 | 17190 | 18080 | + | GT2 |
| pfam | HRGMv2_3228_1 | HRGMv2_3228_1_18 | 18100 | 19272 | + | PS_pyruv_trans |
| pfam | HRGMv2_3228_1 | HRGMv2_3228_1_19 | 19275 | 20828 | + | Polysacc_synt |
| CAZyme | HRGMv2_3228_1 | HRGMv2_3228_1_20 | 20840 | 21817 | + | GT2 |
Gene ID: HRGMv2_3228_1_3
Type: TC
Location: 2980 - 3699 (+)
Type: TC
Location: 2980 - 3699 (+)
Gene ID: HRGMv2_3228_1_4
Type: TC
Location: 3995 - 5878 (+)
Type: TC
Location: 3995 - 5878 (+)
Gene ID: HRGMv2_3228_1_5
Type: TC
Location: 5950 - 6588 (+)
Type: TC
Location: 5950 - 6588 (+)
Gene ID: HRGMv2_3228_1_6
Type: CAZyme
Location: 6600 - 7685 (+)
Type: CAZyme
Location: 6600 - 7685 (+)
Gene ID: HRGMv2_3228_1_7
Type: TC
Location: 7689 - 8825 (+)
Type: TC
Location: 7689 - 8825 (+)
Gene ID: HRGMv2_3228_1_8
Type: CAZyme
Location: 8845 - 9816 (+)
Type: CAZyme
Location: 8845 - 9816 (+)
Gene ID: HRGMv2_3228_1_9
Type: CAZyme
Location: 9819 - 10745 (+)
Type: CAZyme
Location: 9819 - 10745 (+)
Gene ID: HRGMv2_3228_1_10
Type: pfam
Location: 10745 - 11722 (+)
Type: pfam
Location: 10745 - 11722 (+)
Gene ID: HRGMv2_3228_1_11
Type: CAZyme
Location: 11738 - 12850 (+)
Type: CAZyme
Location: 11738 - 12850 (+)
Gene ID: HRGMv2_3228_1_12
Type: pfam
Location: 12855 - 13397 (+)
Type: pfam
Location: 12855 - 13397 (+)
Gene ID: HRGMv2_3228_1_13
Type: CAZyme
Location: 13410 - 14183 (+)
Type: CAZyme
Location: 13410 - 14183 (+)
Gene ID: HRGMv2_3228_1_14
Type: CAZyme
Location: 14192 - 15190 (+)
Type: CAZyme
Location: 14192 - 15190 (+)
Gene ID: HRGMv2_3228_1_15
Type: CAZyme
Location: 15200 - 16159 (+)
Type: CAZyme
Location: 15200 - 16159 (+)
Gene ID: HRGMv2_3228_1_16
Type: CAZyme
Location: 16184 - 17179 (+)
Type: CAZyme
Location: 16184 - 17179 (+)
Gene ID: HRGMv2_3228_1_17
Type: CAZyme
Location: 17190 - 18080 (+)
Type: CAZyme
Location: 17190 - 18080 (+)
Gene ID: HRGMv2_3228_1_18
Type: pfam
Location: 18100 - 19272 (+)
Type: pfam
Location: 18100 - 19272 (+)
Gene ID: HRGMv2_3228_1_19
Type: pfam
Location: 19275 - 20828 (+)
Type: pfam
Location: 19275 - 20828 (+)
Gene ID: HRGMv2_3228_1_20
Type: CAZyme
Location: 20840 - 21817 (+)
Type: CAZyme
Location: 20840 - 21817 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Intestinibacter
Species
Intestinibacter bartlettii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.