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Cluster: HRGMv2_3210_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3210_1 HRGMv2_3210_1_154 180480 181892 + 3.B.1.1.2
TC HRGMv2_3210_1 HRGMv2_3210_1_155 181921 182340 + 3.B.1.1.2
TC HRGMv2_3210_1 HRGMv2_3210_1_156 182380 183777 + 3.B.1.1.6
pfam HRGMv2_3210_1 HRGMv2_3210_1_157 184110 185366 + Lip_C
CAZyme HRGMv2_3210_1 HRGMv2_3210_1_158 185546 187546 + GH151
pfam HRGMv2_3210_1 HRGMv2_3210_1_159 187861 189114 + DUF676 | Lip_C
TC HRGMv2_3210_1 HRGMv2_3210_1_160 189221 190573 - 2.A.66.1.32
TF HRGMv2_3210_1 HRGMv2_3210_1_161 190829 191308 + MarR
TC HRGMv2_3210_1 HRGMv2_3210_1_162 191295 192548 + 2.A.1.59.4
Gene ID: HRGMv2_3210_1_154
Type: TC
Location: 180480 - 181892 (+)
Gene ID: HRGMv2_3210_1_155
Type: TC
Location: 181921 - 182340 (+)
Gene ID: HRGMv2_3210_1_156
Type: TC
Location: 182380 - 183777 (+)
Gene ID: HRGMv2_3210_1_157
Type: pfam
Location: 184110 - 185366 (+)
Gene ID: HRGMv2_3210_1_158
Type: CAZyme
Location: 185546 - 187546 (+)
Gene ID: HRGMv2_3210_1_159
Type: pfam
Location: 187861 - 189114 (+)
Gene ID: HRGMv2_3210_1_160
Type: TC
Location: 189221 - 190573 (-)
Gene ID: HRGMv2_3210_1_161
Type: TF
Location: 190829 - 191308 (+)
Gene ID: HRGMv2_3210_1_162
Type: TC
Location: 191295 - 192548 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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