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Cluster: HRGMv2_3210_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3210_5 HRGMv2_3210_5_1 344 1270 + GH43_22
CAZyme HRGMv2_3210_5 HRGMv2_3210_5_2 1314 2804 + GH51_1
CAZyme HRGMv2_3210_5 HRGMv2_3210_5_3 2904 4211 + GH27
CAZyme HRGMv2_3210_5 HRGMv2_3210_5_4 4336 5304 + GH43_19
pfam HRGMv2_3210_5 HRGMv2_3210_5_5 5971 7656 + MFS_1 | MFS_2
pfam HRGMv2_3210_5 HRGMv2_3210_5_6 7653 8486 + LRR_5 | LRR_5
TC HRGMv2_3210_5 HRGMv2_3210_5_7 8684 10174 + 2.A.2.3.2
Gene ID: HRGMv2_3210_5_1
Type: CAZyme
Location: 344 - 1270 (+)
Gene ID: HRGMv2_3210_5_2
Type: CAZyme
Location: 1314 - 2804 (+)
Gene ID: HRGMv2_3210_5_3
Type: CAZyme
Location: 2904 - 4211 (+)
Gene ID: HRGMv2_3210_5_4
Type: CAZyme
Location: 4336 - 5304 (+)
Gene ID: HRGMv2_3210_5_5
Type: pfam
Location: 5971 - 7656 (+)
Gene ID: HRGMv2_3210_5_6
Type: pfam
Location: 7653 - 8486 (+)
Gene ID: HRGMv2_3210_5_7
Type: TC
Location: 8684 - 10174 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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