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Cluster: HRGMv2_3210_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3210_1 HRGMv2_3210_1_24 32224 34494 + GH127
pfam HRGMv2_3210_1 HRGMv2_3210_1_25 34538 35986 + MFS_1 | MFS_2
pfam HRGMv2_3210_1 HRGMv2_3210_1_26 36190 37023 + LRR_5 | LRR_5
CAZyme HRGMv2_3210_1 HRGMv2_3210_1_27 37045 39123 + GH36
pfam HRGMv2_3210_1 HRGMv2_3210_1_28 39144 39677 + Acetyltransf_1 | Acetyltransf_7
NULL(UNKNOWN) HRGMv2_3210_1 HRGMv2_3210_1_29 39929 40096 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3210_1 HRGMv2_3210_1_30 40211 40732 - 9.B.156.3.1
TC HRGMv2_3210_1 HRGMv2_3210_1_31 40734 41327 - 9.B.156.3.1
TF HRGMv2_3210_1 HRGMv2_3210_1_32 41497 41751 + SpoVT_AbrB
NULL(UNKNOWN) HRGMv2_3210_1 HRGMv2_3210_1_33 41854 42819 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3210_1 HRGMv2_3210_1_34 42833 44422 - 2.A.50.2.1
Gene ID: HRGMv2_3210_1_24
Type: CAZyme
Location: 32224 - 34494 (+)
Gene ID: HRGMv2_3210_1_25
Type: pfam
Location: 34538 - 35986 (+)
Gene ID: HRGMv2_3210_1_26
Type: pfam
Location: 36190 - 37023 (+)
Gene ID: HRGMv2_3210_1_27
Type: CAZyme
Location: 37045 - 39123 (+)
Gene ID: HRGMv2_3210_1_28
Type: pfam
Location: 39144 - 39677 (+)
Gene ID: HRGMv2_3210_1_29
Type:
Location: 39929 - 40096 (-)
Gene ID: HRGMv2_3210_1_30
Type: TC
Location: 40211 - 40732 (-)
Gene ID: HRGMv2_3210_1_31
Type: TC
Location: 40734 - 41327 (-)
Gene ID: HRGMv2_3210_1_32
Type: TF
Location: 41497 - 41751 (+)
Gene ID: HRGMv2_3210_1_33
Type:
Location: 41854 - 42819 (-)
Gene ID: HRGMv2_3210_1_34
Type: TC
Location: 42833 - 44422 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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