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Cluster: HRGMv2_3207_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3207_3 HRGMv2_3207_3_74 76761 78041 + GH28
TC HRGMv2_3207_3 HRGMv2_3207_3_75 78315 79382 + 3.A.1.2.3
TC HRGMv2_3207_3 HRGMv2_3207_3_76 79467 81005 + 3.A.1.2.3
TC HRGMv2_3207_3 HRGMv2_3207_3_77 81142 82227 + 3.A.1.2.3
pfam HRGMv2_3207_3 HRGMv2_3207_3_78 82258 82629 + Flg_new
TF HRGMv2_3207_3 HRGMv2_3207_3_79 82773 84380 + HTH_AraC
TC HRGMv2_3207_3 HRGMv2_3207_3_80 84377 86110 + 9.B.33.1.1
TC HRGMv2_3207_3 HRGMv2_3207_3_81 86107 87066 + 3.A.1.2.8
TC HRGMv2_3207_3 HRGMv2_3207_3_82 87091 88083 + 8.A.5.1.1
Gene ID: HRGMv2_3207_3_74
Type: CAZyme
Location: 76761 - 78041 (+)
Gene ID: HRGMv2_3207_3_75
Type: TC
Location: 78315 - 79382 (+)
Gene ID: HRGMv2_3207_3_76
Type: TC
Location: 79467 - 81005 (+)
Gene ID: HRGMv2_3207_3_77
Type: TC
Location: 81142 - 82227 (+)
Gene ID: HRGMv2_3207_3_78
Type: pfam
Location: 82258 - 82629 (+)
Gene ID: HRGMv2_3207_3_79
Type: TF
Location: 82773 - 84380 (+)
Gene ID: HRGMv2_3207_3_80
Type: TC
Location: 84377 - 86110 (+)
Gene ID: HRGMv2_3207_3_81
Type: TC
Location: 86107 - 87066 (+)
Gene ID: HRGMv2_3207_3_82
Type: TC
Location: 87091 - 88083 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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