Cluster: HRGMv2_3205_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3205
- CGC Family ID: CGCFAM_04180
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3205_16 | HRGMv2_3205_16_6 | 9311 | 10231 | + | 8.A.5.1.7 |
| CAZyme | HRGMv2_3205_16 | HRGMv2_3205_16_7 | 10249 | 12594 | + | GH3 |
| TF | HRGMv2_3205_16 | HRGMv2_3205_16_8 | 12796 | 13812 | + | LacI |
| STP | HRGMv2_3205_16 | HRGMv2_3205_16_9 | 13966 | 15621 | + | SBP_bac_1 |
| CAZyme | HRGMv2_3205_16 | HRGMv2_3205_16_10 | 15672 | 18560 | + | GH3 |
Gene ID: HRGMv2_3205_16_6
Type: TC
Location: 9311 - 10231 (+)
Type: TC
Location: 9311 - 10231 (+)
Gene ID: HRGMv2_3205_16_7
Type: CAZyme
Location: 10249 - 12594 (+)
Type: CAZyme
Location: 10249 - 12594 (+)
Gene ID: HRGMv2_3205_16_8
Type: TF
Location: 12796 - 13812 (+)
Type: TF
Location: 12796 - 13812 (+)
Gene ID: HRGMv2_3205_16_9
Type: STP
Location: 13966 - 15621 (+)
Type: STP
Location: 13966 - 15621 (+)
Gene ID: HRGMv2_3205_16_10
Type: CAZyme
Location: 15672 - 18560 (+)
Type: CAZyme
Location: 15672 - 18560 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
HGM13006
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.