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Cluster: HRGMv2_3205_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3205_15 HRGMv2_3205_15_11 12834 14378 - 2.A.66.1.40
pfam HRGMv2_3205_15 HRGMv2_3205_15_12 14399 15601 - Wzy_C
CAZyme HRGMv2_3205_15 HRGMv2_3205_15_13 15613 16605 - GT2
pfam HRGMv2_3205_15 HRGMv2_3205_15_14 16602 16994 - CTP_transf_like
pfam HRGMv2_3205_15 HRGMv2_3205_15_15 16991 17827 - LicD
CAZyme HRGMv2_3205_15 HRGMv2_3205_15_16 17830 18594 - GT111
TC HRGMv2_3205_15 HRGMv2_3205_15_17 18625 19281 - 9.B.18.1.2
Gene ID: HRGMv2_3205_15_11
Type: TC
Location: 12834 - 14378 (-)
Gene ID: HRGMv2_3205_15_12
Type: pfam
Location: 14399 - 15601 (-)
Gene ID: HRGMv2_3205_15_13
Type: CAZyme
Location: 15613 - 16605 (-)
Gene ID: HRGMv2_3205_15_14
Type: pfam
Location: 16602 - 16994 (-)
Gene ID: HRGMv2_3205_15_15
Type: pfam
Location: 16991 - 17827 (-)
Gene ID: HRGMv2_3205_15_16
Type: CAZyme
Location: 17830 - 18594 (-)
Gene ID: HRGMv2_3205_15_17
Type: TC
Location: 18625 - 19281 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3205_15_14 vegetarian > omnivore 1.58231 0.00665
HRGMv2_3205_15_14 vegetarian > vegan 1.27052 0.00037

🧭 Explore Read Mapping of CGC

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