Cluster: HRGMv2_3205_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3205
- CGC Family ID: CGCFAM_03167
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3205_8 | HRGMv2_3205_8_28 | 24885 | 26648 | + | 2.A.58.2.2 |
| CAZyme | HRGMv2_3205_8 | HRGMv2_3205_8_29 | 26689 | 28503 | - | CE4 |
| TC | HRGMv2_3205_8 | HRGMv2_3205_8_30 | 28524 | 29897 | - | 2.A.66.1.28 |
| pfam | HRGMv2_3205_8 | HRGMv2_3205_8_31 | 29990 | 30400 | - | Pep_deformylase |
| TC | HRGMv2_3205_8 | HRGMv2_3205_8_32 | 30545 | 33103 | - | 9.B.74.1.4 |
| TC | HRGMv2_3205_8 | HRGMv2_3205_8_33 | 33100 | 35208 | - | 2.A.6.5.1 |
Gene ID: HRGMv2_3205_8_28
Type: TC
Location: 24885 - 26648 (+)
Type: TC
Location: 24885 - 26648 (+)
Gene ID: HRGMv2_3205_8_29
Type: CAZyme
Location: 26689 - 28503 (-)
Type: CAZyme
Location: 26689 - 28503 (-)
Gene ID: HRGMv2_3205_8_30
Type: TC
Location: 28524 - 29897 (-)
Type: TC
Location: 28524 - 29897 (-)
Gene ID: HRGMv2_3205_8_31
Type: pfam
Location: 29990 - 30400 (-)
Type: pfam
Location: 29990 - 30400 (-)
Gene ID: HRGMv2_3205_8_32
Type: TC
Location: 30545 - 33103 (-)
Type: TC
Location: 30545 - 33103 (-)
Gene ID: HRGMv2_3205_8_33
Type: TC
Location: 33100 - 35208 (-)
Type: TC
Location: 33100 - 35208 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
HGM13006
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3205_8_33 | vegetarian > vegan | 1.28325 | 0.00037 |