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Cluster: HRGMv2_3205_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3205_4 HRGMv2_3205_4_11 11403 12797 + 2.A.66.1.33
pfam HRGMv2_3205_4 HRGMv2_3205_4_12 12794 13477 + Hydrolase | HAD | Hydrolase_like | HAD_2
TC HRGMv2_3205_4 HRGMv2_3205_4_13 13550 14455 - 3.A.1.3.10
TC HRGMv2_3205_4 HRGMv2_3205_4_14 14708 15472 - 3.A.1.3.14
TC HRGMv2_3205_4 HRGMv2_3205_4_15 15465 16151 - 3.A.1.3.8
TC HRGMv2_3205_4 HRGMv2_3205_4_16 16132 16791 - 3.A.1.3.2
STP HRGMv2_3205_4 HRGMv2_3205_4_17 17462 18745 + Aminotran_1_2
STP HRGMv2_3205_4 HRGMv2_3205_4_18 18890 19318 + CBS | CBS
CAZyme HRGMv2_3205_4 HRGMv2_3205_4_19 19448 22000 + GH3
Gene ID: HRGMv2_3205_4_11
Type: TC
Location: 11403 - 12797 (+)
Gene ID: HRGMv2_3205_4_12
Type: pfam
Location: 12794 - 13477 (+)
Gene ID: HRGMv2_3205_4_13
Type: TC
Location: 13550 - 14455 (-)
Gene ID: HRGMv2_3205_4_14
Type: TC
Location: 14708 - 15472 (-)
Gene ID: HRGMv2_3205_4_15
Type: TC
Location: 15465 - 16151 (-)
Gene ID: HRGMv2_3205_4_16
Type: TC
Location: 16132 - 16791 (-)
Gene ID: HRGMv2_3205_4_17
Type: STP
Location: 17462 - 18745 (+)
Gene ID: HRGMv2_3205_4_18
Type: STP
Location: 18890 - 19318 (+)
Gene ID: HRGMv2_3205_4_19
Type: CAZyme
Location: 19448 - 22000 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3205_4_11 vegetarian > vegan 2.43870 0.00037
HRGMv2_3205_4_18 vegetarian > vegan 2.08841 0.00037
HRGMv2_3205_4_19 vegetarian > vegan 1.60573 0.00037

🧭 Explore Read Mapping of CGC

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