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Cluster: HRGMv2_3205_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3205_2 HRGMv2_3205_2_76 77788 78765 - GT2
pfam HRGMv2_3205_2 HRGMv2_3205_2_77 78762 80240 - O-antigen_lig
CAZyme HRGMv2_3205_2 HRGMv2_3205_2_78 80405 82954 + GT4
NULL(UNKNOWN) HRGMv2_3205_2 HRGMv2_3205_2_79 82951 83454 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3205_2 HRGMv2_3205_2_80 83465 83884 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3205_2 HRGMv2_3205_2_81 83888 87229 + GT4
pfam HRGMv2_3205_2 HRGMv2_3205_2_82 87280 88641 - MMR_HSR1 | FeoB_N | TrmE_N | MnmE_helical
TC HRGMv2_3205_2 HRGMv2_3205_2_83 88634 90007 - 2.A.66.1.33
Gene ID: HRGMv2_3205_2_76
Type: CAZyme
Location: 77788 - 78765 (-)
Gene ID: HRGMv2_3205_2_77
Type: pfam
Location: 78762 - 80240 (-)
Gene ID: HRGMv2_3205_2_78
Type: CAZyme
Location: 80405 - 82954 (+)
Gene ID: HRGMv2_3205_2_79
Type:
Location: 82951 - 83454 (+)
Gene ID: HRGMv2_3205_2_80
Type:
Location: 83465 - 83884 (+)
Gene ID: HRGMv2_3205_2_81
Type: CAZyme
Location: 83888 - 87229 (+)
Gene ID: HRGMv2_3205_2_82
Type: pfam
Location: 87280 - 88641 (-)
Gene ID: HRGMv2_3205_2_83
Type: TC
Location: 88634 - 90007 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3205_2_83 vegetarian > vegan 2.55339 0.00037

🧭 Explore Read Mapping of CGC

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