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Cluster: HRGMv2_3205_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3205_23 HRGMv2_3205_23_22 17816 20326 + GT51
pfam HRGMv2_3205_23 HRGMv2_3205_23_23 20339 21205 + Methyltransf_15 | Methyltrans_SAM
TC HRGMv2_3205_23 HRGMv2_3205_23_24 21210 22061 + 3.A.1.26.7
TC HRGMv2_3205_23 HRGMv2_3205_23_25 22304 23170 + 3.A.1.26.9
TC HRGMv2_3205_23 HRGMv2_3205_23_26 23164 23967 + 3.A.1.25.4
pfam HRGMv2_3205_23 HRGMv2_3205_23_27 23978 24742 + PseudoU_synth_1 | PseudoU_synth_1
NULL(UNKNOWN) HRGMv2_3205_23 HRGMv2_3205_23_28 24732 25823 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3205_23 HRGMv2_3205_23_29 25883 28171 + 3.A.9.1.2
Gene ID: HRGMv2_3205_23_22
Type: CAZyme
Location: 17816 - 20326 (+)
Gene ID: HRGMv2_3205_23_23
Type: pfam
Location: 20339 - 21205 (+)
Gene ID: HRGMv2_3205_23_24
Type: TC
Location: 21210 - 22061 (+)
Gene ID: HRGMv2_3205_23_25
Type: TC
Location: 22304 - 23170 (+)
Gene ID: HRGMv2_3205_23_26
Type: TC
Location: 23164 - 23967 (+)
Gene ID: HRGMv2_3205_23_27
Type: pfam
Location: 23978 - 24742 (+)
Gene ID: HRGMv2_3205_23_28
Type:
Location: 24732 - 25823 (+)
Gene ID: HRGMv2_3205_23_29
Type: TC
Location: 25883 - 28171 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3205_23_25 vegetarian > vegan 1.43204 0.00037

🧭 Explore Read Mapping of CGC

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