Cluster: HRGMv2_3205_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3205
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3205_21 | HRGMv2_3205_21_14 | 14918 | 15772 | - | 2.A.115.1.5 |
| NULL(UNKNOWN) | HRGMv2_3205_21 | HRGMv2_3205_21_15 | 15931 | 16071 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_3205_21 | HRGMv2_3205_21_16 | 16150 | 16794 | - | 0045030 |
| CAZyme | HRGMv2_3205_21 | HRGMv2_3205_21_17 | 16855 | 17658 | - | CE4 |
| TC | HRGMv2_3205_21 | HRGMv2_3205_21_18 | 17742 | 18917 | - | 2.A.4.7.4 |
Gene ID: HRGMv2_3205_21_14
Type: TC
Location: 14918 - 15772 (-)
Type: TC
Location: 14918 - 15772 (-)
Gene ID: HRGMv2_3205_21_15
Type:
Location: 15931 - 16071 (-)
Type:
Location: 15931 - 16071 (-)
Gene ID: HRGMv2_3205_21_16
Type: TF
Location: 16150 - 16794 (-)
Type: TF
Location: 16150 - 16794 (-)
Gene ID: HRGMv2_3205_21_17
Type: CAZyme
Location: 16855 - 17658 (-)
Type: CAZyme
Location: 16855 - 17658 (-)
Gene ID: HRGMv2_3205_21_18
Type: TC
Location: 17742 - 18917 (-)
Type: TC
Location: 17742 - 18917 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
HGM13006
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3205_21_14 | vegetarian > omnivore | 1.73551 | 0.02641 |
| HRGMv2_3205_21_14 | vegetarian > vegan | 1.31837 | 0.00037 |
| HRGMv2_3205_21_17 | vegetarian > vegan | 1.68734 | 0.00037 |