Cluster: HRGMv2_3204_CGC20
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3204
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3204_29 | HRGMv2_3204_29_8 | 5130 | 6158 | + | 3.A.1.34.1 |
| TC | HRGMv2_3204_29 | HRGMv2_3204_29_9 | 6243 | 7226 | + | 3.A.1.34.1 |
| TC | HRGMv2_3204_29 | HRGMv2_3204_29_10 | 7229 | 8020 | + | 3.A.1.34.1 |
| NULL(UNKNOWN) | HRGMv2_3204_29 | HRGMv2_3204_29_11 | 8271 | 8462 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3204_29 | HRGMv2_3204_29_12 | 8513 | 9166 | - | ABC2_membrane_5 |
| TC | HRGMv2_3204_29 | HRGMv2_3204_29_13 | 9179 | 10042 | - | 3.A.1.149.1 |
| TF | HRGMv2_3204_29 | HRGMv2_3204_29_14 | 10029 | 10427 | - | GntR |
| TC | HRGMv2_3204_29 | HRGMv2_3204_29_15 | 10609 | 11949 | - | 2.A.22.5.3 |
| TC | HRGMv2_3204_29 | HRGMv2_3204_29_16 | 11967 | 13313 | - | 2.A.66.1.33 |
| pfam | HRGMv2_3204_29 | HRGMv2_3204_29_17 | 13413 | 14756 | - | WG_beta_rep | WG_beta_rep |
| TC | HRGMv2_3204_29 | HRGMv2_3204_29_18 | 14935 | 15483 | - | 9.B.105.1.3 |
| CAZyme | HRGMv2_3204_29 | HRGMv2_3204_29_19 | 15728 | 18100 | - | GT35 |
| CAZyme | HRGMv2_3204_29 | HRGMv2_3204_29_20 | 18124 | 19629 | - | GH77 |
Gene ID: HRGMv2_3204_29_8
Type: TC
Location: 5130 - 6158 (+)
Type: TC
Location: 5130 - 6158 (+)
Gene ID: HRGMv2_3204_29_9
Type: TC
Location: 6243 - 7226 (+)
Type: TC
Location: 6243 - 7226 (+)
Gene ID: HRGMv2_3204_29_10
Type: TC
Location: 7229 - 8020 (+)
Type: TC
Location: 7229 - 8020 (+)
Gene ID: HRGMv2_3204_29_11
Type:
Location: 8271 - 8462 (+)
Type:
Location: 8271 - 8462 (+)
Gene ID: HRGMv2_3204_29_12
Type: pfam
Location: 8513 - 9166 (-)
Type: pfam
Location: 8513 - 9166 (-)
Gene ID: HRGMv2_3204_29_13
Type: TC
Location: 9179 - 10042 (-)
Type: TC
Location: 9179 - 10042 (-)
Gene ID: HRGMv2_3204_29_14
Type: TF
Location: 10029 - 10427 (-)
Type: TF
Location: 10029 - 10427 (-)
Gene ID: HRGMv2_3204_29_15
Type: TC
Location: 10609 - 11949 (-)
Type: TC
Location: 10609 - 11949 (-)
Gene ID: HRGMv2_3204_29_16
Type: TC
Location: 11967 - 13313 (-)
Type: TC
Location: 11967 - 13313 (-)
Gene ID: HRGMv2_3204_29_17
Type: pfam
Location: 13413 - 14756 (-)
Type: pfam
Location: 13413 - 14756 (-)
Gene ID: HRGMv2_3204_29_18
Type: TC
Location: 14935 - 15483 (-)
Type: TC
Location: 14935 - 15483 (-)
Gene ID: HRGMv2_3204_29_19
Type: CAZyme
Location: 15728 - 18100 (-)
Type: CAZyme
Location: 15728 - 18100 (-)
Gene ID: HRGMv2_3204_29_20
Type: CAZyme
Location: 18124 - 19629 (-)
Type: CAZyme
Location: 18124 - 19629 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Hominimerdicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.