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Cluster: HRGMv2_3202_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3202_4 HRGMv2_3202_4_226 237827 240118 - 3.A.9.1.2
NULL(UNKNOWN) HRGMv2_3202_4 HRGMv2_3202_4_227 240263 241348 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3202_4 HRGMv2_3202_4_228 241338 242102 - PseudoU_synth_1 | PseudoU_synth_1
TC HRGMv2_3202_4 HRGMv2_3202_4_229 242115 242918 - 3.A.1.25.4
TC HRGMv2_3202_4 HRGMv2_3202_4_230 242912 243778 - 3.A.1.26.9
TC HRGMv2_3202_4 HRGMv2_3202_4_231 243855 244706 - 3.A.1.26.7
pfam HRGMv2_3202_4 HRGMv2_3202_4_232 244711 245577 - Methyltransf_15 | Methyltrans_SAM
CAZyme HRGMv2_3202_4 HRGMv2_3202_4_233 245590 248103 - GT51
Gene ID: HRGMv2_3202_4_226
Type: TC
Location: 237827 - 240118 (-)
Gene ID: HRGMv2_3202_4_227
Type:
Location: 240263 - 241348 (-)
Gene ID: HRGMv2_3202_4_228
Type: pfam
Location: 241338 - 242102 (-)
Gene ID: HRGMv2_3202_4_229
Type: TC
Location: 242115 - 242918 (-)
Gene ID: HRGMv2_3202_4_230
Type: TC
Location: 242912 - 243778 (-)
Gene ID: HRGMv2_3202_4_231
Type: TC
Location: 243855 - 244706 (-)
Gene ID: HRGMv2_3202_4_232
Type: pfam
Location: 244711 - 245577 (-)
Gene ID: HRGMv2_3202_4_233
Type: CAZyme
Location: 245590 - 248103 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3202_4_232 vegetarian > vegan 1.04779 0.00441

🧭 Explore Read Mapping of CGC

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