Cluster: HRGMv2_3202_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3202
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3202_3 | HRGMv2_3202_3_126 | 126784 | 127761 | + | 9.B.146.1.3 |
| TC | HRGMv2_3202_3 | HRGMv2_3202_3_127 | 127778 | 128908 | + | 2.A.103.1.3 |
| CAZyme | HRGMv2_3202_3 | HRGMv2_3202_3_128 | 128981 | 130105 | + | GT28 |
Gene ID: HRGMv2_3202_3_126
Type: TC
Location: 126784 - 127761 (+)
Type: TC
Location: 126784 - 127761 (+)
Gene ID: HRGMv2_3202_3_127
Type: TC
Location: 127778 - 128908 (+)
Type: TC
Location: 127778 - 128908 (+)
Gene ID: HRGMv2_3202_3_128
Type: CAZyme
Location: 128981 - 130105 (+)
Type: CAZyme
Location: 128981 - 130105 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
HGM13006
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3202_3_127 | vegetarian > vegan | 1.03811 | 0.00441 |
| HRGMv2_3202_3_128 | vegetarian > vegan | 1.09624 | 0.00441 |