Cluster: HRGMv2_3202_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3202
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3202_1 | HRGMv2_3202_1_81 | 89127 | 90569 | - | 2.A.46.1.8 |
| CAZyme | HRGMv2_3202_1 | HRGMv2_3202_1_82 | 90712 | 91989 | - | CE4 |
| TF | HRGMv2_3202_1 | HRGMv2_3202_1_83 | 92125 | 92982 | - | HTH_6 |
| NULL(UNKNOWN) | HRGMv2_3202_1 | HRGMv2_3202_1_84 | 93205 | 94581 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3202_1 | HRGMv2_3202_1_85 | 94710 | 96083 | + | 2.A.66.1.25 |
Gene ID: HRGMv2_3202_1_81
Type: TC
Location: 89127 - 90569 (-)
Type: TC
Location: 89127 - 90569 (-)
Gene ID: HRGMv2_3202_1_82
Type: CAZyme
Location: 90712 - 91989 (-)
Type: CAZyme
Location: 90712 - 91989 (-)
Gene ID: HRGMv2_3202_1_83
Type: TF
Location: 92125 - 92982 (-)
Type: TF
Location: 92125 - 92982 (-)
Gene ID: HRGMv2_3202_1_84
Type:
Location: 93205 - 94581 (+)
Type:
Location: 93205 - 94581 (+)
Gene ID: HRGMv2_3202_1_85
Type: TC
Location: 94710 - 96083 (+)
Type: TC
Location: 94710 - 96083 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
HGM13006
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3202_1_81 | vegetarian > omnivore | 1.22810 | 0.00694 |
| HRGMv2_3202_1_81 | vegetarian > vegan | 1.87469 | 0.00441 |