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Cluster: HRGMv2_3197_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3197_10 HRGMv2_3197_10_23 19533 20975 + GT5
pfam HRGMv2_3197_10 HRGMv2_3197_10_24 21108 21755 + SurA_N_2 | SurA_N_3
NULL(UNKNOWN) HRGMv2_3197_10 HRGMv2_3197_10_25 21800 22273 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3197_10 HRGMv2_3197_10_26 22368 23501 - GH179
CAZyme HRGMv2_3197_10 HRGMv2_3197_10_27 23763 24902 - GH109
TC HRGMv2_3197_10 HRGMv2_3197_10_28 25093 26118 - 3.A.1.2.21
pfam HRGMv2_3197_10 HRGMv2_3197_10_29 26220 27227 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TF HRGMv2_3197_10 HRGMv2_3197_10_30 27469 28308 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_3197_10 HRGMv2_3197_10_31 28344 29147 - GT2
pfam HRGMv2_3197_10 HRGMv2_3197_10_32 29319 31160 - SLH | SLH
TC HRGMv2_3197_10 HRGMv2_3197_10_33 31268 32440 - 3.A.1.122.2
TC HRGMv2_3197_10 HRGMv2_3197_10_34 32442 33257 - 3.A.1.122.2
pfam HRGMv2_3197_10 HRGMv2_3197_10_35 33254 35080 - HlyD_3 | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC HRGMv2_3197_10 HRGMv2_3197_10_36 35266 35613 - 3.A.1.2.21
pfam HRGMv2_3197_10 HRGMv2_3197_10_37 35664 36290 - Peripla_BP_4
TF HRGMv2_3197_10 HRGMv2_3197_10_38 36906 37790 + HTH_AraC | HTH_AraC
TC HRGMv2_3197_10 HRGMv2_3197_10_39 37845 39215 - 2.A.66.1.28
TF HRGMv2_3197_10 HRGMv2_3197_10_40 39524 40396 + HTH_AraC
TC HRGMv2_3197_10 HRGMv2_3197_10_41 40592 42511 + 2.A.103.1.7
Gene ID: HRGMv2_3197_10_23
Type: CAZyme
Location: 19533 - 20975 (+)
Gene ID: HRGMv2_3197_10_24
Type: pfam
Location: 21108 - 21755 (+)
Gene ID: HRGMv2_3197_10_25
Type:
Location: 21800 - 22273 (+)
Gene ID: HRGMv2_3197_10_26
Type: CAZyme
Location: 22368 - 23501 (-)
Gene ID: HRGMv2_3197_10_27
Type: CAZyme
Location: 23763 - 24902 (-)
Gene ID: HRGMv2_3197_10_28
Type: TC
Location: 25093 - 26118 (-)
Gene ID: HRGMv2_3197_10_29
Type: pfam
Location: 26220 - 27227 (-)
Gene ID: HRGMv2_3197_10_30
Type: TF
Location: 27469 - 28308 (-)
Gene ID: HRGMv2_3197_10_31
Type: CAZyme
Location: 28344 - 29147 (-)
Gene ID: HRGMv2_3197_10_32
Type: pfam
Location: 29319 - 31160 (-)
Gene ID: HRGMv2_3197_10_33
Type: TC
Location: 31268 - 32440 (-)
Gene ID: HRGMv2_3197_10_34
Type: TC
Location: 32442 - 33257 (-)
Gene ID: HRGMv2_3197_10_35
Type: pfam
Location: 33254 - 35080 (-)
Gene ID: HRGMv2_3197_10_36
Type: TC
Location: 35266 - 35613 (-)
Gene ID: HRGMv2_3197_10_37
Type: pfam
Location: 35664 - 36290 (-)
Gene ID: HRGMv2_3197_10_38
Type: TF
Location: 36906 - 37790 (+)
Gene ID: HRGMv2_3197_10_39
Type: TC
Location: 37845 - 39215 (-)
Gene ID: HRGMv2_3197_10_40
Type: TF
Location: 39524 - 40396 (+)
Gene ID: HRGMv2_3197_10_41
Type: TC
Location: 40592 - 42511 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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