Cluster: HRGMv2_3195_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3195
- CGC Family ID: CGCFAM_06522
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3195_5 | HRGMv2_3195_5_79 | 98058 | 99176 | - | GT28 |
| pfam | HRGMv2_3195_5 | HRGMv2_3195_5_80 | 99164 | 99781 | - | G3P_acyltransf |
| TC | HRGMv2_3195_5 | HRGMv2_3195_5_81 | 99952 | 103557 | - | 3.A.1.122.2 |
| CAZyme | HRGMv2_3195_5 | HRGMv2_3195_5_82 | 103879 | 105360 | - | GH32 |
| STP | HRGMv2_3195_5 | HRGMv2_3195_5_83 | 105491 | 107191 | - | SBP_bac_1 |
| TC | HRGMv2_3195_5 | HRGMv2_3195_5_84 | 107233 | 108147 | - | 3.A.1.1.29 |
| TC | HRGMv2_3195_5 | HRGMv2_3195_5_85 | 108162 | 109136 | - | 3.A.1.1.10 |
Gene ID: HRGMv2_3195_5_79
Type: CAZyme
Location: 98058 - 99176 (-)
Type: CAZyme
Location: 98058 - 99176 (-)
Gene ID: HRGMv2_3195_5_80
Type: pfam
Location: 99164 - 99781 (-)
Type: pfam
Location: 99164 - 99781 (-)
Gene ID: HRGMv2_3195_5_81
Type: TC
Location: 99952 - 103557 (-)
Type: TC
Location: 99952 - 103557 (-)
Gene ID: HRGMv2_3195_5_82
Type: CAZyme
Location: 103879 - 105360 (-)
Type: CAZyme
Location: 103879 - 105360 (-)
Gene ID: HRGMv2_3195_5_83
Type: STP
Location: 105491 - 107191 (-)
Type: STP
Location: 105491 - 107191 (-)
Gene ID: HRGMv2_3195_5_84
Type: TC
Location: 107233 - 108147 (-)
Type: TC
Location: 107233 - 108147 (-)
Gene ID: HRGMv2_3195_5_85
Type: TC
Location: 108162 - 109136 (-)
Type: TC
Location: 108162 - 109136 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3195_5_84 | vegan > omnivore | 1.02795 | 0.01057 |