Cluster: HRGMv2_3195_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3195
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3195_5 | HRGMv2_3195_5_55 | 69983 | 71059 | - | 3.A.1.11.8 |
| TC | HRGMv2_3195_5 | HRGMv2_3195_5_56 | 71061 | 72776 | - | 3.A.1.20.2 |
| STP | HRGMv2_3195_5 | HRGMv2_3195_5_57 | 72855 | 74009 | - | SBP_bac_1 |
| peptidase | HRGMv2_3195_5 | HRGMv2_3195_5_58 | 74375 | 75424 | + | M42.UPW |
| CAZyme | HRGMv2_3195_5 | HRGMv2_3195_5_59 | 75649 | 77664 | + | GH120 |
Gene ID: HRGMv2_3195_5_55
Type: TC
Location: 69983 - 71059 (-)
Type: TC
Location: 69983 - 71059 (-)
Gene ID: HRGMv2_3195_5_56
Type: TC
Location: 71061 - 72776 (-)
Type: TC
Location: 71061 - 72776 (-)
Gene ID: HRGMv2_3195_5_57
Type: STP
Location: 72855 - 74009 (-)
Type: STP
Location: 72855 - 74009 (-)
Gene ID: HRGMv2_3195_5_58
Type: peptidase
Location: 74375 - 75424 (+)
Type: peptidase
Location: 74375 - 75424 (+)
Gene ID: HRGMv2_3195_5_59
Type: CAZyme
Location: 75649 - 77664 (+)
Type: CAZyme
Location: 75649 - 77664 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3195_5_55 | vegetarian > vegan | 1.05155 | 0.01287 |