Cluster: HRGMv2_3195_CGC7

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_3195_4	HRGMv2_3195_4_13	14541	15890	-	2.A.66.1.7
TC	HRGMv2_3195_4	HRGMv2_3195_4_14	16118	20365	-	9.B.34.1.1
TF	HRGMv2_3195_4	HRGMv2_3195_4_15	20541	21347	+	MerR
TC	HRGMv2_3195_4	HRGMv2_3195_4_16	21411	23090	-	8.A.7.1.1
STP	HRGMv2_3195_4	HRGMv2_3195_4_17	23173	23430	-	PTS-HPr
pfam	HRGMv2_3195_4	HRGMv2_3195_4_18	23654	24499	-	Hydrolase_3
CAZyme	HRGMv2_3195_4	HRGMv2_3195_4_19	24598	26040	-	GH1
TC	HRGMv2_3195_4	HRGMv2_3195_4_20	26141	27847	-	4.A.1.2.6

Gene ID: HRGMv2_3195_4_13
Type: TC
Location: 14541 - 15890 (-)

Gene ID: HRGMv2_3195_4_14
Type: TC
Location: 16118 - 20365 (-)

Gene ID: HRGMv2_3195_4_15
Type: TF
Location: 20541 - 21347 (+)

Gene ID: HRGMv2_3195_4_16
Type: TC
Location: 21411 - 23090 (-)

Gene ID: HRGMv2_3195_4_17
Type: STP
Location: 23173 - 23430 (-)

Gene ID: HRGMv2_3195_4_18
Type: pfam
Location: 23654 - 24499 (-)

Gene ID: HRGMv2_3195_4_19
Type: CAZyme
Location: 24598 - 26040 (-)

Gene ID: HRGMv2_3195_4_20
Type: TC
Location: 26141 - 27847 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_3195_4_17	vegan > omnivore	1.19924	0.01057
HRGMv2_3195_4_18	vegan > omnivore	1.04629	0.01057
HRGMv2_3195_4_18	vegetarian > omnivore	1.43781	0.03101
HRGMv2_3195_4_20	vegetarian > omnivore	1.35835	0.03101
HRGMv2_3195_4_20	vegetarian > vegan	1.52359	0.01287

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_3195_4_17	nonIBD > UC	1.18748	0.00180
HRGMv2_3195_4_19	UC > CD	1.03760	0.01141
HRGMv2_3195_4_19	nonIBD > CD	1.09777	0.00290