Cluster: HRGMv2_3195_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3195
- CGC Family ID: CGCFAM_02009
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3195_4 | HRGMv2_3195_4_2 | 504 | 1235 | - | 9.B.143.2.3 |
| CAZyme | HRGMv2_3195_4 | HRGMv2_3195_4_3 | 1372 | 2649 | - | GH125 |
| TF | HRGMv2_3195_4 | HRGMv2_3195_4_4 | 2657 | 3757 | - | GntR |
| CAZyme | HRGMv2_3195_4 | HRGMv2_3195_4_5 | 3785 | 5659 | - | GH20 |
| CAZyme | HRGMv2_3195_4 | HRGMv2_3195_4_6 | 5640 | 8171 | - | GH2 |
| STP | HRGMv2_3195_4 | HRGMv2_3195_4_7 | 8239 | 9732 | - | SBP_bac_1 |
| TC | HRGMv2_3195_4 | HRGMv2_3195_4_8 | 9818 | 10699 | - | 3.A.1.1.29 |
| TC | HRGMv2_3195_4 | HRGMv2_3195_4_9 | 10699 | 11625 | - | 3.A.1.1.10 |
Gene ID: HRGMv2_3195_4_2
Type: TC
Location: 504 - 1235 (-)
Type: TC
Location: 504 - 1235 (-)
Gene ID: HRGMv2_3195_4_3
Type: CAZyme
Location: 1372 - 2649 (-)
Type: CAZyme
Location: 1372 - 2649 (-)
Gene ID: HRGMv2_3195_4_4
Type: TF
Location: 2657 - 3757 (-)
Type: TF
Location: 2657 - 3757 (-)
Gene ID: HRGMv2_3195_4_5
Type: CAZyme
Location: 3785 - 5659 (-)
Type: CAZyme
Location: 3785 - 5659 (-)
Gene ID: HRGMv2_3195_4_6
Type: CAZyme
Location: 5640 - 8171 (-)
Type: CAZyme
Location: 5640 - 8171 (-)
Gene ID: HRGMv2_3195_4_7
Type: STP
Location: 8239 - 9732 (-)
Type: STP
Location: 8239 - 9732 (-)
Gene ID: HRGMv2_3195_4_8
Type: TC
Location: 9818 - 10699 (-)
Type: TC
Location: 9818 - 10699 (-)
Gene ID: HRGMv2_3195_4_9
Type: TC
Location: 10699 - 11625 (-)
Type: TC
Location: 10699 - 11625 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.