Cluster: HRGMv2_3195_CGC44
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3195
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3195_60 | HRGMv2_3195_60_2 | 2009 | 3196 | - | 1.I.1.1.3 |
| NULL(UNKNOWN) | HRGMv2_3195_60 | HRGMv2_3195_60_3 | 3240 | 4187 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3195_60 | HRGMv2_3195_60_4 | 4202 | 5620 | - | 2.A.50.2.1 |
| CAZyme | HRGMv2_3195_60 | HRGMv2_3195_60_5 | 5759 | 6343 | - | CBM13 |
| pfam | HRGMv2_3195_60 | HRGMv2_3195_60_6 | 6601 | 7008 | + | MGS |
| pfam | HRGMv2_3195_60 | HRGMv2_3195_60_7 | 7125 | 7772 | + | YitT_membrane |
| TC | HRGMv2_3195_60 | HRGMv2_3195_60_8 | 7779 | 8456 | - | 9.B.143.2.3 |
Gene ID: HRGMv2_3195_60_2
Type: TC
Location: 2009 - 3196 (-)
Type: TC
Location: 2009 - 3196 (-)
Gene ID: HRGMv2_3195_60_3
Type:
Location: 3240 - 4187 (-)
Type:
Location: 3240 - 4187 (-)
Gene ID: HRGMv2_3195_60_4
Type: TC
Location: 4202 - 5620 (-)
Type: TC
Location: 4202 - 5620 (-)
Gene ID: HRGMv2_3195_60_5
Type: CAZyme
Location: 5759 - 6343 (-)
Type: CAZyme
Location: 5759 - 6343 (-)
Gene ID: HRGMv2_3195_60_6
Type: pfam
Location: 6601 - 7008 (+)
Type: pfam
Location: 6601 - 7008 (+)
Gene ID: HRGMv2_3195_60_7
Type: pfam
Location: 7125 - 7772 (+)
Type: pfam
Location: 7125 - 7772 (+)
Gene ID: HRGMv2_3195_60_8
Type: TC
Location: 7779 - 8456 (-)
Type: TC
Location: 7779 - 8456 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.