Cluster: HRGMv2_3195_CGC35
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3195
- CGC Family ID: CGCFAM_00662
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3195_27 | HRGMv2_3195_27_1 | 3 | 920 | + | GH2 |
| CAZyme | HRGMv2_3195_27 | HRGMv2_3195_27_2 | 1138 | 4107 | + | GH3 |
| TC | HRGMv2_3195_27 | HRGMv2_3195_27_3 | 4274 | 5860 | + | 2.A.2.3.5 |
| pfam | HRGMv2_3195_27 | HRGMv2_3195_27_4 | 6062 | 8665 | + | Flg_new | Flg_new | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 |
| TC | HRGMv2_3195_27 | HRGMv2_3195_27_5 | 8828 | 10207 | + | 2.A.66.1.32 |
Gene ID: HRGMv2_3195_27_1
Type: CAZyme
Location: 3 - 920 (+)
Type: CAZyme
Location: 3 - 920 (+)
Gene ID: HRGMv2_3195_27_2
Type: CAZyme
Location: 1138 - 4107 (+)
Type: CAZyme
Location: 1138 - 4107 (+)
Gene ID: HRGMv2_3195_27_3
Type: TC
Location: 4274 - 5860 (+)
Type: TC
Location: 4274 - 5860 (+)
Gene ID: HRGMv2_3195_27_4
Type: pfam
Location: 6062 - 8665 (+)
Type: pfam
Location: 6062 - 8665 (+)
Gene ID: HRGMv2_3195_27_5
Type: TC
Location: 8828 - 10207 (+)
Type: TC
Location: 8828 - 10207 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.