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Cluster: HRGMv2_3195_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3195_26 HRGMv2_3195_26_23 23295 25169 - 4.A.1.2.11
CAZyme HRGMv2_3195_26 HRGMv2_3195_26_24 25193 26611 - GH1
TF HRGMv2_3195_26 HRGMv2_3195_26_25 26845 27720 + HTH_6
CAZyme HRGMv2_3195_26 HRGMv2_3195_26_26 28705 30735 - GH36
CAZyme HRGMv2_3195_26 HRGMv2_3195_26_27 30751 32982 - GH36
STP HRGMv2_3195_26 HRGMv2_3195_26_28 33068 34660 - SBP_bac_1
TC HRGMv2_3195_26 HRGMv2_3195_26_29 34693 35583 - 3.A.1.1.29
TC HRGMv2_3195_26 HRGMv2_3195_26_30 35596 36555 - 3.A.1.1.29
Gene ID: HRGMv2_3195_26_23
Type: TC
Location: 23295 - 25169 (-)
Gene ID: HRGMv2_3195_26_24
Type: CAZyme
Location: 25193 - 26611 (-)
Gene ID: HRGMv2_3195_26_25
Type: TF
Location: 26845 - 27720 (+)
Gene ID: HRGMv2_3195_26_26
Type: CAZyme
Location: 28705 - 30735 (-)
Gene ID: HRGMv2_3195_26_27
Type: CAZyme
Location: 30751 - 32982 (-)
Gene ID: HRGMv2_3195_26_28
Type: STP
Location: 33068 - 34660 (-)
Gene ID: HRGMv2_3195_26_29
Type: TC
Location: 34693 - 35583 (-)
Gene ID: HRGMv2_3195_26_30
Type: TC
Location: 35596 - 36555 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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