Cluster: HRGMv2_3195_CGC31
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3195
- CGC Family ID: CGCFAM_06105
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3195_20 | HRGMv2_3195_20_2 | 1417 | 3384 | - | GH67 |
| pfam | HRGMv2_3195_20 | HRGMv2_3195_20_3 | 3429 | 4565 | - | Aminotran_5 |
| CAZyme | HRGMv2_3195_20 | HRGMv2_3195_20_4 | 4575 | 8021 | - | GH2 |
| STP | HRGMv2_3195_20 | HRGMv2_3195_20_5 | 8167 | 9891 | - | SBP_bac_1 |
| TC | HRGMv2_3195_20 | HRGMv2_3195_20_6 | 9999 | 10895 | - | 3.A.1.1.29 |
| TC | HRGMv2_3195_20 | HRGMv2_3195_20_7 | 10915 | 11868 | - | 3.A.1.1.10 |
| CAZyme | HRGMv2_3195_20 | HRGMv2_3195_20_8 | 12026 | 14179 | - | GH3 |
| CAZyme | HRGMv2_3195_20 | HRGMv2_3195_20_9 | 14224 | 15918 | - | CE17 |
| CAZyme | HRGMv2_3195_20 | HRGMv2_3195_20_10 | 16511 | 17674 | + | GH8 |
| NULL(UNKNOWN) | HRGMv2_3195_20 | HRGMv2_3195_20_11 | 17671 | 19692 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3195_20 | HRGMv2_3195_20_12 | 19689 | 21236 | + | CBM91 | GH43_12 |
Gene ID: HRGMv2_3195_20_2
Type: CAZyme
Location: 1417 - 3384 (-)
Type: CAZyme
Location: 1417 - 3384 (-)
Gene ID: HRGMv2_3195_20_3
Type: pfam
Location: 3429 - 4565 (-)
Type: pfam
Location: 3429 - 4565 (-)
Gene ID: HRGMv2_3195_20_4
Type: CAZyme
Location: 4575 - 8021 (-)
Type: CAZyme
Location: 4575 - 8021 (-)
Gene ID: HRGMv2_3195_20_5
Type: STP
Location: 8167 - 9891 (-)
Type: STP
Location: 8167 - 9891 (-)
Gene ID: HRGMv2_3195_20_6
Type: TC
Location: 9999 - 10895 (-)
Type: TC
Location: 9999 - 10895 (-)
Gene ID: HRGMv2_3195_20_7
Type: TC
Location: 10915 - 11868 (-)
Type: TC
Location: 10915 - 11868 (-)
Gene ID: HRGMv2_3195_20_8
Type: CAZyme
Location: 12026 - 14179 (-)
Type: CAZyme
Location: 12026 - 14179 (-)
Gene ID: HRGMv2_3195_20_9
Type: CAZyme
Location: 14224 - 15918 (-)
Type: CAZyme
Location: 14224 - 15918 (-)
Gene ID: HRGMv2_3195_20_10
Type: CAZyme
Location: 16511 - 17674 (+)
Type: CAZyme
Location: 16511 - 17674 (+)
Gene ID: HRGMv2_3195_20_11
Type:
Location: 17671 - 19692 (+)
Type:
Location: 17671 - 19692 (+)
Gene ID: HRGMv2_3195_20_12
Type: CAZyme
Location: 19689 - 21236 (+)
Type: CAZyme
Location: 19689 - 21236 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3195_20_6 | vegan > omnivore | 1.10308 | 0.01057 |
| HRGMv2_3195_20_7 | vegan > omnivore | 1.02836 | 0.01057 |